Browse Element(s) Details


Os.51647.1.S1_at

Description gb:AK063261.1
DB_XREF= gi:32973279
TID=Os.51647.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51647 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-A07, full insert sequence.
FL= gb:AK063261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g406401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40590OsAffx.4038.1.S1_x_at11/114+23882332..23883374membrane bound O-acyl transferase, putative, expressed
LOC_Os04g40600Os.9958.1.S1_at11/114+23883844..23885826Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40620NANA4+23889996..23890663Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40640Os.51647.1.S1_at1/114+23906872..23907222hypothetical protein
LOC_Os04g40650Os.28791.1.A1_at9/114+23910466..23914147neutral zinc metallopeptidase, putative, expressed
LOC_Os04g40660Os.22519.1.A1_at10/114+23914881..23919303MA3 domain-containing protein, putative, expressed
LOC_Os04g40670Os.53802.1.S1_at11/114+23920272..23923315expressed protein
LOC_Os04g40680Os.50596.1.S1_at6/114+23926935..23928467ubiquitin family protein, putative
LOC_Os04g40690OsAffx.20313.1.S1_x_at2/114+23931957..23933982hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51647.1.S1_at--1131--6731Chr04:23906902..23906926 (25 bp)
GTTCATGACCATGGACTATAGCTCA
LOC_Os04g40640
Os.51647.1.S1_at--1146--8351Chr04:23906870..23906894 (25 bp)
GGCGGAGGCCGATACACAACTGATT
NONE
Os.51647.1.S1_at--1080--2551Chr04:23906853..23906877 (25 bp)
AACTGATTCAGCTAAACCAGCCCTG
NONE
Os.51647.1.S1_at--988--1691Chr04:23906838..23906862 (25 bp)
ACCAGCCCTGATTAGAGATAGCATG
NONE
Os.51647.1.S1_at--687--1731Chr04:23906809..23906833 (25 bp)
ACCATGAGACTTTCAGCTCTGCTTA
NONE
Os.51647.1.S1_at--837--6391Chr04:23906715..23906739 (25 bp)
GATCGATCCATCATGTGTTCTCTTT
NONE
Os.51647.1.S1_at--969--10371NONE
TTTTCTTTTTCGTTGACTTCTGTGA
NONE
Os.51647.1.S1_at--43--10611Chr04:23906675..23906699 (25 bp)
TTCTGTGATTCTGTCCTTGTACCTA
NONE
Os.51647.1.S1_at--213--10811Chr04:23906659..23906683 (25 bp)
TTGTACCTATGTCTCCAGCAGCGTG
NONE
Os.51647.1.S1_at--902--4891Chr04:23906534..23906558 (25 bp)
GCTTAGTTTTCGTCACATTTTTGTA
NONE
Os.51647.1.S1_at--151--5491Chr04:23906497..23906521 (25 bp)
GAACTTGTAGTTTATCTGCTTCTTC
NONE
Target Sequence 
GTTCATGACCATGGACTATAGCTCAGTGAGGAGGCGGAGGCCGATACACAACTGATTCAGCTAAACCAGCCCTGATTAGA
GATAGCATGAGAAACCATGAGACTTTCAGCTCTGCTTACATCTCCATGTCCCAGCAGCAGCAGCAGCAGCAAACAACATC
TACTGAAGCGTGATGCTAGGAGAAGCTGATCGATCCATCATGTGTTCTCTTTTTCTTTTTCGTTGACTTCTGTGATTCTG
TCCTTGTACCTATGTCTCCAGCAGCGTGCACGGACGTGTGCAAGCAAATTTTGCCCCCCTGACCAAATGTTATTATTTGG
ATATATATATACGCAGCAATACTAGTAGTAGCAAGAAGTAGTGCTAATGCTTAGTTTTCGTCACATTTTTGTAAGAAGTT
GTGAAGAACTTGTAGTTTATCTGCTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51647.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis