Browse Element(s) Details


Os.28791.1.A1_at

Description gb:AK111072.1
DB_XREF= gi:32996281
TID=Os.28791.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28791 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E07, full insert sequence.
FL= gb:AK111072.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g406509/11neutral zinc metallopeptidase, putative, expressed
LOC_Os12g190904/11kub3-prov protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40600Os.9958.1.S1_at11/114+23883844..23885826Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40620NANA4+23889996..23890663Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40640Os.51647.1.S1_at1/114+23906872..23907222hypothetical protein
LOC_Os04g40650Os.28791.1.A1_at9/114+23910466..23914147neutral zinc metallopeptidase, putative, expressed
LOC_Os04g40660Os.22519.1.A1_at10/114+23914881..23919303MA3 domain-containing protein, putative, expressed
LOC_Os04g40670Os.53802.1.S1_at11/114+23920272..23923315expressed protein
LOC_Os04g40680Os.50596.1.S1_at6/114+23926935..23928467ubiquitin family protein, putative
LOC_Os04g40690OsAffx.20313.1.S1_x_at2/114+23931957..23933982hypothetical protein
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28791.1.A1_at--606--9191Chr04:23912901..23912925 (25 bp)
TGCCTATGATGATTGTGTTGTCAAG
LOC_Os04g40650
Os.28791.1.A1_at--436--8192Chr12:11079969..11079993 (25 bp)
GGAAGAACTGTGCTCACCATGCTTG
LOC_Os12g19090
Os.28791.1.A1_at--1151--3351Chr04:23912730..23912876 (25 bp)
CACCATGCTTGCTCCGAGATTCGAG
LOC_Os04g40650
Os.28791.1.A1_at--437--6051Chr04:23912715..23912738 (24 bp)
GAGATTCGAGCTAACCACCTTAGTG
LOC_Os04g40650
Os.28791.1.A1_at--760--7752Chr12:11079809..11079833 (25 bp)
GGTGACTGCCATTATAAACGTGAAT
LOC_Os12g19090
Os.28791.1.A1_at--990--2372Chr12:11079794..11079818 (25 bp)
AAACGTGAATTGTTGCGTGGCTTCA
LOC_Os12g19090
Os.28791.1.A1_at--251--2731NONE
AAGAATGTGTTAAACGGCGGGCTCT
NONE
Os.28791.1.A1_at--261--8371Chr04:23910836..23910860 (25 bp)
GGCGGGCTCTGATGTCTCTCAGGAA
LOC_Os04g40650
Os.28791.1.A1_at--474--4371Chr04:23910807..23910831 (25 bp)
CCACACTGTTCAGGGACAGCTGCAA
LOC_Os04g40650
Os.28791.1.A1_at--767--672Chr12:11078571..11078595 (25 bp)
ATGACTCGAGTTCATGAACATTGTA
LOC_Os12g19090
Os.28791.1.A1_at--89--9631Chr04:23910450..23910474 (25 bp)
TCATGAGGTAAACGCTACTGTCTTG
NONE
Target Sequence 
TGCCTATGATGATTGTGTTGTCAAGGACATGGATTGGAAGAACTGTGCTCACCATGCTTGCTCCGAGATTCGAGCTAACC
ACCTTAGTGGTGACTGCCATTATAAACGTGAATTGTTGCGTGGCTTCATGAAGATGAGGGGGCATGAGCAAGAATGTGTT
AAACGGCGGGCTCTGATGTCTCTCAGGAACNANCCCACACTGTTCAGGGACAGCTGCAAAAGATGCNGTTGAGGCTGTAT
GGAGNATATGCTACAATGATACACGCCCATTTGATAGGGCTCCATGATATTATTGGCAACATTACAAGAAGCCATGAATT
AAGATTGTGCACCCCTGCTGGGGATAATTTTGTTCCCCTTCAGTCAATTGTAGTTAAGCAAAGAACTTATTTTTTTGCTG
GAGCAAAGCTGTATTAGGCTATAAGTCATGACTCGAGTTCATGAACATTGTAGTGAATTAGCTCATATGATGATTCTATT
ATCTTTTGCATTACATAGTTGGACNAAGTATNATAAGCTCCTAGAAAAGACTTGTGCCATGGGTTACTTCTTCATGAGGT
AAACGCTACTGTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28791.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis