Browse Element(s) Details


Os.53802.1.S1_at

Description gb:AK100146.1
DB_XREF= gi:32985355
TID=Os.53802.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013P08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013P08, full insert sequence.
FL= gb:AK100146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4067011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40640Os.51647.1.S1_at1/114+23906872..23907222hypothetical protein
LOC_Os04g40650Os.28791.1.A1_at9/114+23910466..23914147neutral zinc metallopeptidase, putative, expressed
LOC_Os04g40660Os.22519.1.A1_at10/114+23914881..23919303MA3 domain-containing protein, putative, expressed
LOC_Os04g40670Os.53802.1.S1_at11/114+23920272..23923315expressed protein
LOC_Os04g40680Os.50596.1.S1_at6/114+23926935..23928467ubiquitin family protein, putative
LOC_Os04g40690OsAffx.20313.1.S1_x_at2/114+23931957..23933982hypothetical protein
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53802.1.S1_at--840--1691Chr04:23923011..23923133 (25 bp)
ACCACAAGCCGCGATTCGCGGTGGA
LOC_Os04g40670
Os.53802.1.S1_at--914--2911Chr04:23922931..23922955 (25 bp)
AAGGAGCACAAGTACCCGTTCAAGG
LOC_Os04g40670
Os.53802.1.S1_at--910--8711Chr04:23920598..23920622 (25 bp)
TGTCTGCGGTGACGCACCGGTACCA
LOC_Os04g40670
Os.53802.1.S1_at--461--4291Chr04:23920483..23920507 (25 bp)
CCTCGACAAGTCCTGATCTGATTAG
LOC_Os04g40670
Os.53802.1.S1_at--1161--10331Chr04:23920427..23920451 (25 bp)
TTTACATGAGCATACCAGTACAATT
LOC_Os04g40670
Os.53802.1.S1_at--186--6911Chr04:23920351..23920375 (25 bp)
GTATCTGTAAGTAAGCACTGGCACT
LOC_Os04g40670
Os.53802.1.S1_at--42--7071Chr04:23920341..23920365 (25 bp)
GTAAGCACTGGCACTGTAATCGCCA
LOC_Os04g40670
Os.53802.1.S1_at--240--1971Chr04:23920329..23920353 (25 bp)
ACTGTAATCGCCAACACCTGTGTGA
LOC_Os04g40670
Os.53802.1.S1_at--745--4371Chr04:23920319..23920343 (25 bp)
CCAACACCTGTGTGATGGACCAAGG
LOC_Os04g40670
Os.53802.1.S1_at--248--871Chr04:23920294..23920318 (25 bp)
ATGGCGTGCTCTGGATGGATTCAGA
LOC_Os04g40670
Os.53802.1.S1_at--981--6531Chr04:23920277..23920301 (25 bp)
GATTCAGAGGCGGAGCAACAGAAAG
LOC_Os04g40670
Target Sequence 
ACCACAAGCCGCGATTCGCGGTGGAGTGCAGGAAGAAGGACCGGNACCGGGACAGGGACAGGGAGCGGCCGGAGCGGGAG
AAGGAGCACAAGTACCCGTTCAAGGTCGTCGAGATCACGCCGCCGCCGCGGTGCCTCGGCGTCCGCTGCTTCCCCACCAA
CATCCACTGCGGGGAGAGCGTGACGATCGAAGGGCAGGCGTACACGGTGTCTGCGGTGACGCACCGGTACCAGCTGCGCA
AGGGGCGCTACGAGCCCAGCGAGAANCGCCTCGACGTCCTCTCCACCGGCAGATACCTCCTCAACCTCTACCTCGACGGC
CTCCTCGACAAGTCCTGATCTGATTAGATTATGCATCTAATCTACTACTACTCCAGTATTTACATGAGCATACCAGTACA
ATTAATTAAACATCGATCAACTTCTTTTTTTTGTCATGAGAGATGTGTATATATGTATCTGTAAGTAAGCACTGGCACTG
TAATCGCCAACACCTGTGTGATGGACCAAGGATGGCGTGCTCTGGATGGATTCAGAGGCGGAGCAACAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis