Browse Element(s) Details


Os.9958.1.S1_at

Description gb:AK064801.1
DB_XREF= gi:32974819
TID=Os.9958.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000D08, full insert sequence.
FL= gb:AK064801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4060011/11Peptide methionine sulfoxide reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40550OsAffx.26406.1.S1_s_at11/114+23858715..23860838expressed protein
LOC_Os04g40550OsAffx.26406.1.S1_at11/114+23858715..23860838expressed protein
LOC_Os04g40560NANA4+23867520..23868962expressed protein
LOC_Os04g40570Os.55136.1.S1_at11/114+23874886..23879151ABC transporter family protein, putative, expressed
LOC_Os04g40580Os.56033.1.S1_at11/114+23879216..23880536MBOAT family protein, expressed
LOC_Os04g40590OsAffx.4038.1.S1_x_at11/114+23882332..23883374membrane bound O-acyl transferase, putative, expressed
LOC_Os04g40600Os.9958.1.S1_at11/114+23883844..23885826Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40620NANA4+23889996..23890663Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40640Os.51647.1.S1_at1/114+23906872..23907222hypothetical protein
LOC_Os04g40650Os.28791.1.A1_at9/114+23910466..23914147neutral zinc metallopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0008113molecular_functionprotein-methionine-S-oxide reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9958.1.S1_at--917--8372Chr05:27968197..27968217 (21 bp)
GGCGTTCCATTGCACATTTGCAGGT
NONE
Os.9958.1.S1_at--735--9911Chr04:23884188..23884212 (25 bp)
TACCGGTATCGTAAACTCGTCAAAG
LOC_Os04g40600
Os.9958.1.S1_at--522--931Chr04:23884165..23884189 (25 bp)
AGGAACCTGCAAATTCTAAGTCGCG
LOC_Os04g40600
Os.9958.1.S1_at--804--4671Chr04:23884143..23884167 (25 bp)
GCGGTGTACGCGATTGTGCCATTGA
LOC_Os04g40600
Os.9958.1.S1_at--306--7431Chr04:23884088..23884112 (25 bp)
GTGTTACAATAAACGCACTGCTTGT
LOC_Os04g40600
Os.9958.1.S1_at--756--4911Chr04:23884069..23884093 (25 bp)
GCTTGTCAAGGTGCAGTATAGTTAT
LOC_Os04g40600
Os.9958.1.S1_at--1094--9111Chr04:23884045..23884069 (25 bp)
TGCTGTATTTGCTTCATTACCTGAT
LOC_Os04g40600
Os.9958.1.S1_at--559--10551Chr04:23884033..23884057 (25 bp)
TTCATTACCTGATCATCGACGCACG
LOC_Os04g40600
Os.9958.1.S1_at--841--4071Chr04:23884017..23884041 (25 bp)
CGACGCACGCGTTATTTCCTTTTGT
LOC_Os04g40600
Os.9958.1.S1_at--859--6271Chr04:23883979..23884003 (25 bp)
GATGTACATTTTCAGCTGGTTGTTG
LOC_Os04g40600
Os.9958.1.S1_at--272--6651Chr04:23883961..23883985 (25 bp)
GTTGTTGAGTCAGTTAGCAGCCATA
LOC_Os04g40600
Target Sequence 
GGCGTTCCATTGCACATTTGCAGGTGTGCNTGTTTACTGTAGTAATAACTACCGGTATCGTAAACTCGTCAAAGGAACCT
GCAAATTCTAAGTCGCGGTGTACGCGATTGTGCCATTGAAAGTTTGAAACTGTGGGAGTATATATATCTGTGTTACAATA
AACGCACTGCTTGTCAAGGTGCAGTATAGTTATGCTGTATTTGCTTCATTACCTGATCATCGACGCACGCGTTATTTCCT
TTTGTGGGATTAACTAATGATGTACATTTTCAGCTGGTTGTTGAGTCAGTTAGCAGCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis