Browse Element(s) Details


OsAffx.4038.1.S1_x_at

Description tigr:9632.m03856
TID=OsAffx.4038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4059011/11membrane bound O-acyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40540Os.6061.1.S1_at11/114+23856161..23858505Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os04g40550OsAffx.26406.1.S1_s_at11/114+23858715..23860838expressed protein
LOC_Os04g40550OsAffx.26406.1.S1_at11/114+23858715..23860838expressed protein
LOC_Os04g40560NANA4+23867520..23868962expressed protein
LOC_Os04g40570Os.55136.1.S1_at11/114+23874886..23879151ABC transporter family protein, putative, expressed
LOC_Os04g40580Os.56033.1.S1_at11/114+23879216..23880536MBOAT family protein, expressed
LOC_Os04g40590OsAffx.4038.1.S1_x_at11/114+23882332..23883374membrane bound O-acyl transferase, putative, expressed
LOC_Os04g40600Os.9958.1.S1_at11/114+23883844..23885826Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40620NANA4+23889996..23890663Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40640Os.51647.1.S1_at1/114+23906872..23907222hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4038.1.S1_x_at--141--9411Chr04:23882906..23882930 (25 bp)
TCGTCCTCTACTCGCTGCACGTGTA
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--689--9971Chr04:23882793..23882817 (25 bp)
TACCTGTCAGCGCACCTGCGGGACT
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--208--7111Chr04:23882788..23882812 (25 bp)
GTCAGCGCACCTGCGGGACTTCTGG
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--439--8111Chr04:23882763..23882787 (25 bp)
GGACGGAGGTGGAACCTCTCGGTGC
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--232--10631Chr04:23882646..23882670 (25 bp)
TTCGTCTCGGGCGTCATGCACGAGC
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--251--7131Chr04:23882634..23882658 (25 bp)
GTCATGCACGAGCTGATGTTCTACT
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--264--6291Chr04:23882620..23882644 (25 bp)
GATGTTCTACTACATCACGCTGCGG
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--858--8451Chr04:23882471..23882495 (25 bp)
TGGCGCTCGTCATGTCCACGGGGTT
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--789--531Chr04:23882397..23882421 (25 bp)
ATCGCCGAGAGCGAGGCGGTCGTCG
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--655--4631Chr04:23882373..23882397 (25 bp)
GCGTTCGTGCGGGACACCGGCATCT
LOC_Os04g40590
OsAffx.4038.1.S1_x_at--1057--4651Chr04:23882365..23882389 (25 bp)
GCGGGACACCGGCATCTGGGCGGCC
LOC_Os04g40590
Target Sequence 
TCGTCCTCTACTCGCTGCACGTGTACCTCGCGCTGGAGCTCGTCCTGGCGTGCGCGGCGGCGGCGGTGCGCGCGGTGATG
GGGATGGATCTGGAGCCGCAGTTCGACAGGCCCTACCTGTCAGCGCACCTGCGGGACTTCTGGGGACGGAGGTGGAACCT
CTCGGTGCCGGCGGTGCTCCGCCCGTGCGTCAGCCACCCCGTGCGCGCGCGCGTCGGCGAGGGAGCCGCCGGCTTCGCGG
CGGGGGTCCTCGCCGCGTTCTTCGTCTCGGGCGTCATGCACGAGCTGATGTTCTACTACATCACGCTGCGGCCGCCGACG
GGGGAGGCGACCGCGTTCTTCACGCTGCACGGGGCGCTCGCCGTGGCGGAGGGGTGGTGGGCGGCGCGCGAGGGGTGGCC
GCGGCCGCCGCGCCCCGTCGCGACCGCGCTGACGCTGGCGCTCGTCATGTCCACGGGGTTCTGGCTCTTCTTCCCGCCGA
TCACGAGGGCCGGCGCCGACAAGGTGGTGATCGCCGAGAGCGAGGCGGTCGTCGCGTTCGTGCGGGACACCGGCATCTGG
GCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4038.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis