Browse Element(s) Details


Os.55136.1.S1_at

Description gb:AK107554.1
DB_XREF= gi:32992763
TID=Os.55136.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-B02, full insert sequence.
FL= gb:AK107554.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4057011/11ABC transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40520Os.14920.1.S1_s_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520OsAffx.4037.1.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40530Os.52433.1.S1_at11/114+23854240..23855631expressed protein
LOC_Os04g40540Os.6061.1.S1_at11/114+23856161..23858505Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os04g40550OsAffx.26406.1.S1_s_at11/114+23858715..23860838expressed protein
LOC_Os04g40550OsAffx.26406.1.S1_at11/114+23858715..23860838expressed protein
LOC_Os04g40560NANA4+23867520..23868962expressed protein
LOC_Os04g40570Os.55136.1.S1_at11/114+23874886..23879151ABC transporter family protein, putative, expressed
LOC_Os04g40580Os.56033.1.S1_at11/114+23879216..23880536MBOAT family protein, expressed
LOC_Os04g40590OsAffx.4038.1.S1_x_at11/114+23882332..23883374membrane bound O-acyl transferase, putative, expressed
LOC_Os04g40600Os.9958.1.S1_at11/114+23883844..23885826Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40620NANA4+23889996..23890663Peptide methionine sulfoxide reductase, putative, expressed
LOC_Os04g40630Os.26472.1.S1_at11/114+23896823..23899115TAZ zinc finger family protein, expressed
LOC_Os04g40630OsAffx.20328.1.S1_x_at2/114+23896823..23899115TAZ zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55136.1.S1_at--609--9571Chr04:23878582..23878606 (25 bp)
TCTTCTCCGGGACGATACGCGACAA
LOC_Os04g40570
Os.55136.1.S1_at--701--1831Chr04:23878598..23878622 (25 bp)
ACGCGACAACATAGCGTACGGCGCC
LOC_Os04g40570
Os.55136.1.S1_at--85--1811Chr04:23878912..23878936 (25 bp)
ACCGCCTCTCGACGGTGGAGAAGTC
LOC_Os04g40570
Os.55136.1.S1_at--1038--2831Chr04:23878932..23878956 (25 bp)
AAGTCCGACACGATCGCGGTGGTGA
LOC_Os04g40570
Os.55136.1.S1_at--789--1891Chr04:23879019..23879043 (25 bp)
ACGTACTACAACCTGATCAAGCTCC
LOC_Os04g40570
Os.55136.1.S1_at--1103--8831Chr04:23879032..23879056 (25 bp)
TGATCAAGCTCCAGCACGGCAGATC
LOC_Os04g40570
Os.55136.1.S1_at--392--7271Chr04:23879060..23879084 (25 bp)
GTGCCTTAGTCCCATGTGAAGTGAT
LOC_Os04g40570
Os.55136.1.S1_at--449--5331Chr04:23879077..23879101 (25 bp)
GAAGTGATGGCGTAGTCCACCACAC
LOC_Os04g40570
Os.55136.1.S1_at--842--7251Chr04:23879091..23879115 (25 bp)
GTCCACCACACGAATCATTGCGTTG
LOC_Os04g40570
Os.55136.1.S1_at--656--3591Chr04:23879106..23879130 (25 bp)
CATTGCGTTGCATACATGGTCGAGC
LOC_Os04g40570
Os.55136.1.S1_at--705--9851Chr04:23879118..23879142 (25 bp)
TACATGGTCGAGCAATGGAACGGTT
LOC_Os04g40570
Target Sequence 
TCTTCTCCGGGACGATACGCGACAACATAGCGTACGGCGCCGCCGAAGAGCACGCCACCGAGGACGAGGTGGCCCGCGCC
GCGGCGCTCGCCAACGCCCACGGGTTCATCAGCGCCATGGAGCGCGGGTACGACACGCGCGTCGGGGAGCGCGGCGCGCA
GCTGTCGGGGGGGCAGAGGCAGCGGATCGCGCTGGCGCGGGCGGTGCTGAAGGACGCGAGGATCCTGCTGCTGGACGAGG
CGACAAGCGCGCTGGACGCCGCGTCGGAGAGGCTGGTGCAGGACGCCGTGGACCGGATGCTGCGGGGGAGGACGTGCGTC
GTGGTGGCGCACCGCCTCTCGACGGTGGAGAAGTCCGACACGATCGCGGTGGTGAAGGACGGGAGGGTGGCGGAGAGAGG
GAGGCACCACGAGCTCCTCGCCGTCGGCCGCGCCGGGACGTACTACAACCTGATCAAGCTCCAGCACGGCAGATCGCCGT
GCCTTAGTCCCATGTGAAGTGATGGCGTAGTCCACCACACGAATCATTGCGTTGCATACATGGTCGAGCAATGGAACGGT
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis