Browse Element(s) Details


OsAffx.4037.1.S1_x_at

Description tigr:9632.m03849
TID=OsAffx.4037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Raffinose synthase or seed imbibition protein Sip1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4052011/11Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed
LOC_Os04g40490Os.56341.1.S1_at11/114+23835790..23839863Cellulase containing protein, expressed
LOC_Os04g40500Os.56341.1.S1_at1/114+23840950..23844414glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os04g40520Os.14920.1.S1_s_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520OsAffx.4037.1.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40510NANA4+23846150..23849402Cellulase containing protein, expressed
LOC_Os04g40530Os.52433.1.S1_at11/114+23854240..23855631expressed protein
LOC_Os04g40540Os.6061.1.S1_at11/114+23856161..23858505Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os04g40550OsAffx.26406.1.S1_s_at11/114+23858715..23860838expressed protein
LOC_Os04g40550OsAffx.26406.1.S1_at11/114+23858715..23860838expressed protein
LOC_Os04g40560NANA4+23867520..23868962expressed protein
LOC_Os04g40570Os.55136.1.S1_at11/114+23874886..23879151ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4037.1.S1_x_at--853--6211Chr04:23846593..23846617 (25 bp)
GAGGCGGACGCAGTTGAAACCCATG
LOC_Os04g40520
OsAffx.4037.1.S1_x_at--903--851Chr04:23846571..23846595 (25 bp)
ATGGCGTCCACGTCCTTGGCGATGG
LOC_Os04g40520
OsAffx.4037.1.S1_x_at--738--491Chr04:23846511..23846535 (25 bp)
ATCGGCTCCAGGTGCGACGGCCAGT
LOC_Os04g40520
OsAffx.4037.1.S1_x_at--922--10332Chr11:16525635..16525654 (20 bp)
TTTATAGCGAGTACTACGGCGGCGG
NONE
OsAffx.4037.1.S1_x_at--62--2971Chr04:23846232..23846256 (25 bp)
AATGGCGAGGCTTCACGGGATTGCC
LOC_Os04g40520
OsAffx.4037.1.S1_x_at--925--8351Chr04:23846204..23846228 (25 bp)
GGCGGAAGACGACGATCTCTCCTAA
LOC_Os04g40520
OsAffx.4037.1.S1_x_at--1064--451Chr04:23846190..23846214 (25 bp)
ATCTCTCCTAAGCTATGCTGCTGGT
LOC_Os04g40520
OsAffx.4037.1.S1_x_at--927--4772Chr03:12984156..12984569 (25 bp)
GCTGCTGGTCCTTGACATGTGTGAA
NONE
OsAffx.4037.1.S1_x_at--560--5131Chr04:23846120..23846144 (25 bp)
GCAAATCGCATTGCTGATGTTTCAA
LOC_Os04g40520
OsAffx.4037.1.S1_x_at--220--2251Chr04:23846085..23846109 (25 bp)
AAATACTGTTTTATCCTTCAAGGCA
LOC_Os04g40520
OsAffx.4037.1.S1_x_at--1055--4831Chr04:23846054..23846078 (25 bp)
GCTAAGCGACATCACTGTACGTCTG
LOC_Os04g40520
Target Sequence 
GAGGCGGACGCAGTTGAAACCCATGGCGTCCACGTCCTTGGCGATGGCGCCCACAGGCTGCTTGCCCAGCCCTTCCGCCA
GCATCGGCTCCAGGTGCGACGGCCAGTTCACGCACGCCAGCTTCACCCTGTTCCCGCCCTCGTCGACGATCCACCTCGAC
GCCGTCGACAGCGTCGTCGCTGCCGCCGCCGCCGCGGGGCGCCCATGGCTGGCCAGACCAAGAACCGCCACCGCGGCGAG
CCACACCACCACGAGCCTCATGTCGACGCCGGCCGTCCGGCAATGCGAGACACCGAGAAGAAGCAGCGGCGAGGTGGATT
TATAGCGAGTACTACGGCGGCGGGGTTGCTTCGGCATGGGGAATGGCGAGGCTTCACGGGATTGCCATGGGCGGAAGACG
ACGATCTCTCCTAAGCTATGCTGCTGGTCCTTGACATGTGTGAAGTGGAGAGGCCATGAATGAGGGTGAGTGAGCAAATC
GCATTGCTGATGTTTCAAGAATGCAACCAAATACTGTTTTATCCTTCAAGGCAGGACAAGCTAAGCGACATCACTGTACG
TCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4037.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis