Browse Element(s) Details


Os.14920.3.S1_x_at

Description gb:AK111421.1
DB_XREF= gi:32996630
TID=Os.14920.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14920 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-G09, full insert sequence.
FL= gb:AK111421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4052011/11Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40450OsAffx.31464.1.S1_at1/114+23817574..23821989retrotransposon protein, putative, unclassified
LOC_Os04g40460Os.50432.1.S1_at5/114+23824785..23827959Cytochrome P450 family protein
LOC_Os04g40470Os.50432.1.S1_at11/114+23829975..23832047Cytochrome P450 family protein, expressed
LOC_Os04g40490Os.56341.1.S1_at11/114+23835790..23839863Cellulase containing protein, expressed
LOC_Os04g40500Os.56341.1.S1_at1/114+23840950..23844414glycosyl hydrolase family 5 protein, putative, expressed
LOC_Os04g40520Os.14920.1.S1_s_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520OsAffx.4037.1.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40520Os.14920.3.S1_x_at11/114+23846023..23853029Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os04g40510NANA4+23846150..23849402Cellulase containing protein, expressed
LOC_Os04g40530Os.52433.1.S1_at11/114+23854240..23855631expressed protein
LOC_Os04g40540Os.6061.1.S1_at11/114+23856161..23858505Protein-L-isoaspartate O-methyltransferase, putative, expressed
LOC_Os04g40550OsAffx.26406.1.S1_s_at11/114+23858715..23860838expressed protein
LOC_Os04g40550OsAffx.26406.1.S1_at11/114+23858715..23860838expressed protein
LOC_Os04g40560NANA4+23867520..23868962expressed protein
LOC_Os04g40570Os.55136.1.S1_at11/114+23874886..23879151ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14920.3.S1_x_at--716--5271Chr04:23852470..23852494 (25 bp)
GAATGAGCTCCAATTTTGCTTCGAG
LOC_Os04g40520
Os.14920.3.S1_x_at--823--9371Chr04:23852339..23852474 (25 bp)
TCGAGAGCGGTGATCCTGAGGTTCA
LOC_Os04g40520
Os.14920.3.S1_x_at--861--7611Chr04:23852276..23852300 (25 bp)
GGGACAACCCTTTCAAGCTTATGAA
LOC_Os04g40520
Os.14920.3.S1_x_at--630--2771Chr04:23851963..23851984 (22 bp)
AAGAGATCCCTGCAAACCTGGACTG
LOC_Os04g40520
Os.14920.3.S1_x_at--475--7731Chr04:23851933..23851957 (25 bp)
GGTGGTGCACTTGGGATGCTTTTTA
LOC_Os04g40520
Os.14920.3.S1_x_at--1079--331Chr04:23851909..23851933 (25 bp)
ATAAATCTGTCAACCCAGTGGGAAT
LOC_Os04g40520
Os.14920.3.S1_x_at--46--6151Chr04:23851743..23851767 (25 bp)
GAGGTGCACCACCAAGGTTTCTAAT
LOC_Os04g40520
Os.14920.3.S1_x_at--395--7991Chr04:23851673..23851697 (25 bp)
GGATGAGGCCTTTATTGAACAGACT
LOC_Os04g40520
Os.14920.3.S1_x_at--577--5491Chr04:23851657..23851681 (25 bp)
GAACAGACTGTGTTAGCGTCTAACC
LOC_Os04g40520
Os.14920.3.S1_x_at--741--1571Chr04:23851643..23851667 (25 bp)
AGCGTCTAACCATTTTTCAACTTGC
LOC_Os04g40520
Os.14920.3.S1_x_at--656--9711Chr04:23851627..23851651 (25 bp)
TCAACTTGCTGATCGGTCCATGAAG
LOC_Os04g40520
Target Sequence 
GAATGAGCTCCAATTTTGCTTCGAGAGCGGTGATCCTGAGGTTCAGACACTGGAAGCAGTTGATGCTGTATTCATCAACT
CAGGGGACAACCCTTTCAAGCTTATGAAGGAATCAATCAAGATGTTATCTAAGATCAAAGGAACTTTCAGTCATATAGAG
GACAAAGAGATCCCTGCAAACCTGGACTGGTTTGGGTGGTGCACTTGGGATGCTTTTTATAAATCTGTCAACCCAGTGGG
AATTGAAGAGGGCCTTAAAAGTTTGTGTGAAGGAGGTGCACCACCAAGGTTTCTAATTATAGACGATGGCTGGCAAGAAA
CCGTTAACGGATTCAAGGAAGTGGATGAGGCCTTTATTGAACAGACTGTGTTAGCGTCTAACCATTTTTCAACTTGCTGA
TCGGTCCATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14920.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis