Browse Element(s) Details


Os.18149.1.S1_x_at

Description gb:AK073227.1
DB_XREF= gi:32983250
TID=Os.18149.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024H06, full insert sequence.
FL= gb:AK073227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4074010/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0019762biological_processglucosinolate catabolism
GO:0030234molecular_functionenzyme regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18149.1.S1_x_at--388--631Chr04:23962584..23962608 (25 bp)
ATGCTCGGTCTTTCTGATTCTCAAA
LOC_Os04g40740
Os.18149.1.S1_x_at--330--8911Chr04:23962322..23962346 (25 bp)
TGAGCACACTCAACACACTGGAAAG
LOC_Os04g40740
Os.18149.1.S1_x_at--549--2231Chr04:23962193..23962215 (23 bp)
AAAGGAGCTCCGCAAAGATGGTTTT
LOC_Os04g40740
Os.18149.1.S1_x_at--943--7871Chr04:23962174..23962198 (25 bp)
GGTTTTGATCTTGCCGAAACTCGAT
LOC_Os04g40740
Os.18149.1.S1_x_at--266--8171Chr04:23962145..23962169 (25 bp)
GGAACTGAAACCCATACTCGACGAG
LOC_Os04g40740
Os.18149.1.S1_x_at--204--1631Chr04:23962035..23962059 (25 bp)
AGCTGGCTGTGCTCGAGGCTGAACA
LOC_Os04g40740
Os.18149.1.S1_x_at--496--1131Chr04:23961991..23962015 (25 bp)
AGTGCTTCCACTAGTTCCAAGAAAG
LOC_Os04g40740
Os.18149.1.S1_x_at--453--7931Chr04:23961871..23961895 (25 bp)
GGATTTTTTCCTTTCTGAGCCATTG
LOC_Os04g40740
Os.18149.1.S1_x_at--369--4431NONE
GCCATTGGTCAGCTCGGTCGATTAA
NONE
Os.18149.1.S1_x_at--757--7211Chr04:23961837..23961860 (24 bp)
GTCGATTAATCCACACGAGGTGCCT
LOC_Os04g40740
Os.18149.1.S1_x_at--654--4011Chr04:23961765..23961789 (25 bp)
CGTACTGTATTTGCGATTCCTCGGA
LOC_Os04g40740
Target Sequence 
ATGCTCGGTCTTTCTGATTCTCAAAGGACTCCAATGCCAGGAGAGTCACTAAAAGATTTCTACAAGAGAACGGATATGTA
CTGGCAGATGGCTGCATATGAGCACACTCAACACACTGGAAAGGAGCTCCGCAAAGATGGTTTTGATCTTGCCGAAACTC
GATATAAGGAACTGAAACCCATACTCGACGAGCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCT
TCCACTAGTTCCAAGAAAGACACGAGGAAAAGCAAGCAGAAGAGTGGCATGAGATAGCTTTGGTTCGAAATATCGAAATA
GAGAGTGGTTTAGGCCAATGCTTTAAGCCATCTGGGATTTTTTCCTTTCTGAGCCATTGGTCAGCTCGGTCGATTAATCC
ACACGAGGTGCCTATAACTACCTGTGTAGGTTGGCTTAATCCATGGTTAAAATTTTCCAACGTACTGTATTTGCGATTCC
TCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18149.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis