Browse Element(s) Details


Os.18149.2.S1_at

Description gb:AK073905.1
DB_XREF= gi:32983928
TID=Os.18149.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075M04, full insert sequence.
FL= gb:AK073905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4074010/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein
LOC_Os04g40780OsAffx.26409.2.S1_at11/114+23980029..23981835F-box domain containing protein
LOC_Os04g40790OsAffx.4039.1.S1_at7/114+23983218..23985589hypothetical protein
LOC_Os04g40800OsAffx.4040.1.S1_at11/114+23987154..23991019F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0019762biological_processglucosinolate catabolism
GO:0030234molecular_functionenzyme regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18149.2.S1_at--201--8751Chr04:23961723..23961747 (25 bp)
TGTACACAGTTCTATTCATCGGAAA
LOC_Os04g40740
Os.18149.2.S1_at--816--111Chr04:23961710..23961734 (25 bp)
ATTCATCGGAAATTCGTTACTACGT
LOC_Os04g40740
Os.18149.2.S1_at--652--9371Chr04:23961697..23961721 (25 bp)
TCGTTACTACGTACAAGTTTTGAGT
LOC_Os04g40740
Os.18149.2.S1_at--168--6811Chr04:23961681..23961705 (25 bp)
GTTTTGAGTTCTCTACTGTTCAGTG
LOC_Os04g40740
Os.18149.2.S1_at--131--1971Chr04:23961667..23961691 (25 bp)
ACTGTTCAGTGTTCACAGCCTGCGA
LOC_Os04g40740
Os.18149.2.S1_at--982--10511Chr04:23961656..23961680 (25 bp)
TTCACAGCCTGCGATGTAACACGGT
LOC_Os04g40740
Os.18149.2.S1_at--521--3791Chr04:23961648..23961672 (25 bp)
CTGCGATGTAACACGGTACACCCTA
LOC_Os04g40740
Os.18149.2.S1_at--1144--3331Chr04:23961637..23961661 (25 bp)
CACGGTACACCCTAACAGTATCTGG
LOC_Os04g40740
Os.18149.2.S1_at--358--3431Chr04:23961622..23961646 (25 bp)
CAGTATCTGGGTGCGGTGTAAATTC
LOC_Os04g40740
Os.18149.2.S1_at--833--7412Chr08:14077755..14077795 (24 bp)
GTGTAAATTCACTCCATCCGTTTCA
NONE
Os.18149.2.S1_at--1053--9611Chr04:23961585..23961609 (25 bp)
TCAGGTTACCAGACGTTTATAGACA
NONE
Target Sequence 
TGTACACAGTTCTATTCATCGGAAATTCGTTACTACGTACAAGTTTTGAGTTCTCTACTGTTCAGTGTTCACAGCCTGCG
ATGTAACACGGTACACCCTAACAGTATCTGGGTGCGGTGTAAATTCACTCCATCCGTTTCAGGTTACCAGACGTTTATAG
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18149.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis