Browse Element(s) Details


Os.51991.1.S1_at

Description gb:AK064487.1
DB_XREF= gi:32974505
TID=Os.51991.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51991 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-B09, full insert sequence.
FL= gb:AK064487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3839211/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38360Os.56216.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38360OsAffx.29313.1.S1_at1/112+23185240..23188680Transposable element protein, putative, MuDR
LOC_Os02g38370NANA2+23190422..23193828transposon protein, putative, unclassified, expressed
LOC_Os02g38380NANA2+23194524..23200484transposon protein, putative, unclassified
LOC_Os02g38386Os.52123.1.S1_at11/112+23203838..23204587NBS-LRR disease resistance protein, putative, expressed
LOC_Os02g38392Os.51991.1.S1_at11/112+23205840..23214043Leucine Rich Repeat family protein, expressed
LOC_Os02g38400NANA2+23218581..23220069Nuclear protein SkiP, putative
LOC_Os02g38410OsAffx.24631.1.S1_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38410OsAffx.24631.1.S1_s_at11/112+23222914..23224983ubiquitin family protein, putative, expressed
LOC_Os02g38420OsAffx.2906.1.S1_at11/112+23229574..23230095hypothetical protein
LOC_Os02g38420OsAffx.22604.1.S1_x_at1/112+23229574..23230095hypothetical protein
LOC_Os02g38430Os.47575.1.S1_at11/112+23231286..23235548expressed protein
LOC_Os02g38430Os.20406.3.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38430Os.50575.2.S1_x_at1/112+23231286..23235548expressed protein
LOC_Os02g38440Os.5903.1.A1_at10/112+23235758..23238754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0042830biological_processdefense response to pathogenic bacteria
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51991.1.S1_at--962--8931Chr02:23208689..23208713 (25 bp)
TGACGACACTCCGATCACTGCGGAT
LOC_Os02g38392
Os.51991.1.S1_at--117--1991Chr02:23208705..23208729 (25 bp)
ACTGCGGATAGATGGCTGCGATAGC
LOC_Os02g38392
Os.51991.1.S1_at--966--7911Chr02:23208749..23208773 (25 bp)
GGTTGGTCAGTCTGTCATTGCTACA
LOC_Os02g38392
Os.51991.1.S1_at--636--5251Chr02:23208798..23208822 (25 bp)
GAATCTGGTATATTTGCCGGCATTT
LOC_Os02g38392
Os.51991.1.S1_at--697--7031Chr02:23208823..23208847 (25 bp)
GTACAAAAGCTTAGTGCCTTGGAGA
LOC_Os02g38392
Os.51991.1.S1_at--57--5391Chr02:23213753..23213777 (25 bp)
GAAGCAAGAGGACACAGCAGACATT
LOC_Os02g38392
Os.51991.1.S1_at--662--10751Chr02:23213776..23213800 (25 bp)
TTGACAGAACTGACGTCCGTGATTA
LOC_Os02g38392
Os.51991.1.S1_at--626--6951Chr02:23213829..23213853 (25 bp)
GTAGACTGTTTTGCGATGCTCGAAC
LOC_Os02g38392
Os.51991.1.S1_at--289--631Chr02:23213844..23213868 (25 bp)
ATGCTCGAACTTGGTGAGTCGTCAC
LOC_Os02g38392
Os.51991.1.S1_at--156--5451Chr02:23213881..23213905 (25 bp)
GAACCCGTCGAGAAGTGTTCTGCAA
LOC_Os02g38392
Os.51991.1.S1_at--341--5871Chr02:23213973..23213997 (25 bp)
GAGCCTCATCGGTATCATGTTTTTT
LOC_Os02g38392
Target Sequence 
TGACGACACTCCGATCACTGCGGATAGATGGCTGCGATAGCATGACGAAACTATCAAAATGGTTGGTCAGTCTGTCATTG
CTACATGAATTAATTATTACTGGTTGTTTGAATCTGGTATATTTGCCGGCATTTGTACAAAAGCTTAGTGCCTTGGAGAA
ATTGGAAATTAATGATAATGATGCACTGCAGAGATGGTGCAGAAACAGCGACAGCTGGATCTCAGAGAATGGCATAAAAA
ACAAGATTTATTTTGATGGTAAGTTGATGAGTACTAAGAAGCAAGAGGACACAGCAGACATTGACAGAACTGACGTCCGT
GATTACAGAAATCCATGCGATGAAGATGAATATGTAGACTGTTTTGCGATGCTCGAACTTGGTGAGTCGTCACGGATGGG
GCGATGAACCCGTCGAGAAGTGTTCTGCAACAGTTGTTTGTATCTGATAGAGATTTGTCTTGTGAGGGTTTATATTACCG
GTTGACCACTAAATTTCGAGCCTCATCGGTATCATGTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis