Browse Element(s) Details


OsAffx.14618.1.S1_x_at

Description tigr:9633.m00918
TID=OsAffx.14618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1056011/11IQ calmodulin-binding motif family protein, expressed
LOC_Os05g104801/11expressed protein
LOC_Os05g104201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10530NANA5+5702407..5705698retrotransposon protein, putative, unclassified
LOC_Os05g10540NANA5+5706328..5712483retrotransposon protein, putative, unclassified
LOC_Os05g10550OsAffx.26814.1.S1_at11/115+5720801..5722058hypothetical protein
LOC_Os05g10560OsAffx.14618.1.S1_x_at11/115+5726656..5727177IQ calmodulin-binding motif family protein, expressed
LOC_Os05g10570Os.35338.1.S1_at11/115+5728909..5730250expressed protein
LOC_Os05g10570Os.50835.1.S1_x_at11/115+5728909..5730250expressed protein
LOC_Os05g10580OsAffx.4294.1.S1_at11/115+5735815..5739914Cullin family protein, expressed
LOC_Os05g10590Os.52472.1.S1_at11/115+5743159..5746733expressed protein
LOC_Os05g10590Os.52472.2.S1_x_at11/115+5743159..5746733expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14618.1.S1_x_at--443--6051Chr05:5726710..5726734 (25 bp)
GAGTGTTCCGCCCTGGACGGAGGAG
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--515--8051Chr05:5726731..5726755 (25 bp)
GGAGAGGACGATGCTCTTGCTCCTC
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--895--3751Chr05:5726744..5726768 (25 bp)
CTCTTGCTCCTCCAGCAAAGAAGAA
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--591--3631Chr05:5726746..5726770 (25 bp)
CTTGCTCCTCCAGCAAAGAAGAAGA
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--44--8571Chr05:5726803..5726827 (25 bp)
TGGATCCTCGCCCAGTCGAACGAGC
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--741--9251Chr05:5726807..5726831 (25 bp)
TCCTCGCCCAGTCGAACGAGCCCGT
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--502--7231Chr05:5726830..5726854 (25 bp)
GTCCCCACCGAGTTCCGGGAGCTGA
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--571--9291Chr05:5726831..5726855 (25 bp)
TCCCCACCGAGTTCCGGGAGCTGAA
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--566--1234Chr05:5726840..5726864 (25 bp)
AGTTCCGGGAGCTGAAGCGCGCCAA
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--596--4151Chr05:5726857..5726893 (25 bp)
CGCGCCAACCCTTCGCTGGAGGAGG
LOC_Os05g10560
OsAffx.14618.1.S1_x_at--771--571Chr05:5727101..5727125 (25 bp)
ATCCTTCCGACACCGACGATGATGA
LOC_Os05g10560
Target Sequence 
GAGTGTTCCGCCCTGGACGGAGGAGAGGACGATGCTCTTGCTCCTCCAGCAAAGAAGAAGAAGATGTGGCTGCTGCCGCA
GGAGGAGGTGGACTGGATCCTCGCCCAGTCGAACGAGCCCGTCCCCACCGAGTTCCGGGAGCTGAAGCGCGCCAACCCTT
CGCTGGAGGAGGAGGCCAAGTTCGCCAAGTTCCAGGCTTGGGTTCGCGGCGAGTACGCTCGGAAAGGATTCGTGGAGGTG
GACTACGACTACTTCGGCGAGAGGGCGGAGGTGTTCAGGCTGAACGACGAGGCACGGGAGGAGGTGATGGGACACTGGGA
TCATCCTTCCGACACCGACGATGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14618.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis