Browse Element(s) Details


OsAffx.14620.1.S1_at

Description tigr:9633.m00910
TID=OsAffx.14620.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1048011/11expressed protein
LOC_Os05g104401/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10420OsAffx.14618.2.S1_at11/115+5657494..5657895hypothetical protein
LOC_Os05g10420OsAffx.14618.1.S1_x_at1/115+5657494..5657895hypothetical protein
LOC_Os05g10430OsAffx.14619.1.S1_at10/115+5659108..5659969hypothetical protein
LOC_Os05g10430OsAffx.14619.1.S1_x_at10/115+5659108..5659969hypothetical protein
LOC_Os05g10440Os.26886.6.S1_s_at7/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.26886.2.S1_s_at6/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.16467.1.S1_at4/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_x_at3/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_at2/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.20851.1.A1_x_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.14620.1.S1_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10450NANA5+5669573..5670100hypothetical protein
LOC_Os05g10460Os.26886.1.S1_x_at4/115+5672145..5673819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10470Os.26886.3.S1_x_at3/115+5674006..5675342transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10480OsAffx.14620.1.S1_at11/115+5678178..5678783expressed protein
LOC_Os05g10480OsAffx.14618.1.S1_x_at1/115+5678178..5678783expressed protein
LOC_Os05g10490OsAffx.26813.1.S1_at11/115+5687350..5688983hypothetical protein
LOC_Os05g10490Os.12074.1.S1_at1/115+5687350..5688983hypothetical protein
LOC_Os05g10500NANA5+5690239..5690469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10510OsAffx.4856.1.S1_x_at1/115+5692639..5696390retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10520NANA5+5696780..5701587retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g10530NANA5+5702407..5705698retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14620.1.S1_at--85--4551Chr05:5678726..5678750 (25 bp)
GCCCTGGCTCATCCATCAAAGAAGA
LOC_Os05g10480
OsAffx.14620.1.S1_at--605--1951Chr05:5678668..5678692 (25 bp)
ACTGGATCCTCGCTCAGTGCAACGA
LOC_Os05g10480
OsAffx.14620.1.S1_at--805--1171Chr05:5678569..5678593 (25 bp)
AGTACACCATGCTTCTCTACGAGTG
LOC_Os05g10480
OsAffx.14620.1.S1_at--848--1111Chr05:5678548..5678572 (25 bp)
AGTGCACCCGCGAATCCTACGAGGA
LOC_Os05g10480
OsAffx.14620.1.S1_at--88--4831Chr05:5678519..5678543 (25 bp)
GCTAAGTACGCCAAGTTCCAGGACT
LOC_Os05g10480
OsAffx.14620.1.S1_at--226--8032Chr05:5678460..5678484 (25 bp)
GGAGGTGGACTATGACTATTTCGCC
LOC_Os05g10480
OsAffx.14620.1.S1_at--240--7611Chr05:5678384..5678408 (25 bp)
GGGCACTGGTCAGATCGTCATCATC
LOC_Os05g10480
OsAffx.14620.1.S1_at--203--5451Chr05:5678306..5678330 (25 bp)
GAACGATTTGATCAACGGTCCGCAA
LOC_Os05g10480
OsAffx.14620.1.S1_at--656--7791Chr05:5678290..5678314 (25 bp)
GGTCCGCAATTTCCCGATTCAACAG
LOC_Os05g10480
OsAffx.14620.1.S1_at--545--131Chr05:5678234..5678258 (25 bp)
ATTCACCTCTGTATGATTCACTTTG
LOC_Os05g10480
OsAffx.14620.1.S1_at--623--131Chr05:5678219..5678243 (25 bp)
ATTCACTTTGTGCTTCCATTCTCTC
LOC_Os05g10480
Target Sequence 
GCCCTGGCTCATCCATCAAAGAAGAAGAAGATGTGGCTGCTGCCCAAGGAGGAGGTGGACTGGATCCTCGCTCAGTGCAA
CGAGCCCATCTGCGCCAGGTTCCGGGAGCTGAAGCGCGCCAACCCGTCGCTGGTGCCGTCGCCGGAGGAGAAGGACGAGT
ACACCATGCTTCTCTACGAGTGCACCCGCGAATCCTACGAGGACGAGGCTAAGTACGCCAAGTTCCAGGACTGGGTTCGG
GGCGAGTACGCTCGCAAAGGATTTGTGGAGGTGGACTATGACTATTTCGCCAAGAGGGAGGAGGCCATTTGGCTGAACGA
GGAAGCACGGGAGGAGGTTTTGGGGCACTGGTCAGATCGTCATCATCCTTCCCACACCGACCTTGACGATGAAGATTGGA
AGCTTGTAAGATCAATTCTAGAACGATTTGATCAACGGTCCGCAATTTCCCGATTCAACAGAAGGAACTAAGCTTTTGTA
GTGAACAAATCAATTCACCTCTGTATGATTCACTTTGTGCTTCCATTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14620.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis