Browse Element(s) Details


Os.12074.1.S1_at

Description gb:AK111552.1
DB_XREF= gi:37988215
TID=Os.12074.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12074 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-301-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052A20, full insert sequence.
FL= gb:AK111552.1 gb:AK104473.1 gb:AK104346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0968011/11Ras-related protein ARA-3, putative, expressed
LOC_Os05g104901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09640OsAffx.5266.1.S1_x_at11/117+5118922..5119329hypothetical protein
LOC_Os07g09640OsAffx.9275.1.S1_x_at1/117+5118922..5119329hypothetical protein
LOC_Os07g09650OsAffx.5267.1.S1_at10/117+5121996..5122814hypothetical protein
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09690Os.23410.1.A1_at11/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09690Os.57159.1.S1_x_at1/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09700OsAffx.5269.1.S1_at10/117+5160577..5161802hypothetical protein
LOC_Os07g09710OsAffx.5270.1.S1_at11/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09710Os.48723.1.A1_at8/117+5163173..5165015F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009873biological_processethylene mediated signaling pathway
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12074.1.S1_at--401--931Chr07:5143776..5143800 (25 bp)
AGGCAGCTGCCTCGTCAAGATGGTC
LOC_Os07g09680
Os.12074.1.S1_at--1020--8731Chr07:5143744..5143768 (25 bp)
TGTAACACCTGATCAACGCTGCGGC
LOC_Os07g09680
Os.12074.1.S1_at--415--8791Chr07:5143701..5143725 (25 bp)
TGTTCGCAGCTTGCCTATGACAGCA
LOC_Os07g09680
Os.12074.1.S1_at--700--671Chr07:5143685..5143709 (25 bp)
ATGACAGCAAATTTACCACTCCCAT
LOC_Os07g09680
Os.12074.1.S1_at--803--4291Chr07:5143664..5143688 (25 bp)
CCATCTTCCGTGTATTCAATGCCAA
LOC_Os07g09680
Os.12074.1.S1_at--587--4391Chr07:5143644..5143668 (25 bp)
GCCAAGATGTATATTTCGCCCAGTT
LOC_Os07g09680
Os.12074.1.S1_at--214--2811Chr07:5143605..5143629 (25 bp)
AAGATCTTTTACCTGACCATTCTGG
LOC_Os07g09680
Os.12074.1.S1_at--988--1731Chr07:5143590..5143614 (25 bp)
ACCATTCTGGTGTTGTGATTCCTCA
LOC_Os07g09680
Os.12074.1.S1_at--659--4272Chr05:5688566..5688924 (25 bp)
CCTGTGTTCTAGCTCTGTTGTTAGT
LOC_Os05g10490
Os.12074.1.S1_at--453--2391Chr07:5143504..5143528 (25 bp)
AAACTCTTCTTTTTTAGCTCTGTGT
LOC_Os07g09680
Os.12074.1.S1_at--195--6251Chr07:5143465..5143489 (25 bp)
GATGGATTTGCTCCTGTCATGTAAA
LOC_Os07g09680
Target Sequence 
AGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTC
GCAGCTTGCCTATGACAGCAAATTTACCACTCCCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGAT
ATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTC
TAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTT
GCTCCTGTCATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis