Browse Element(s) Details


Os.57159.1.S1_x_at

Description gb:AK111044.1
DB_XREF= gi:32996253
TID=Os.57159.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-B10, full insert sequence.
FL= gb:AK111044.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g096901/11galactosyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09690Os.23410.1.A1_at11/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09690Os.57159.1.S1_x_at1/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09700OsAffx.5269.1.S1_at10/117+5160577..5161802hypothetical protein
LOC_Os07g09710OsAffx.5270.1.S1_at11/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09710Os.48723.1.A1_at8/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57159.1.S1_x_at--236--8691Chr12:9439283..9439307 (25 bp)
TGTTCGCGGAACTCGACGACCTCGA
NONE
Os.57159.1.S1_x_at--931--971Chr12:9439223..9439247 (25 bp)
AGGAGGCGACCAAGTGCCCGCAGTC
NONE
Os.57159.1.S1_x_at--639--8931Chr12:9439124..9439148 (25 bp)
TGACCCTAAGATCGCGGTGCTGAGC
NONE
Os.57159.1.S1_x_at--753--5951Chr12:9439093..9439117 (25 bp)
GAGCAACCGATCATGGTGTCGCAGT
NONE
Os.57159.1.S1_x_at--58--7231Chr12:9439076..9439100 (25 bp)
GTCGCAGTTCATGATGGAGCTTCGG
NONE
Os.57159.1.S1_x_at--920--3391Chr12:9438977..9439001 (25 bp)
CAGCAGGCCGGTGATTGAGCAGAAC
NONE
Os.57159.1.S1_x_at--560--1432Chr12:9438957..9438981 (25 bp)
AGAACACCTGCTACCGAATGCAGTG
NONE
Os.57159.1.S1_x_at--765--7371Chr12:9438915..9438939 (25 bp)
GTGAGGGCTGGAAGTCCCACTCTGA
NONE
Os.57159.1.S1_x_at--332--9311Chr12:9438901..9438925 (25 bp)
TCCCACTCTGATGAGGAGACCGGTT
NONE
Os.57159.1.S1_x_at--1037--5811Chr12:9438873..9438897 (25 bp)
GACCCCTGCAATTCCAGTTTGATTA
NONE
Os.57159.1.S1_x_at--1135--1171Chr12:9438795..9438819 (25 bp)
AGTTTGAGAACTGAATTCTGGACGC
NONE
Target Sequence 
TGTTCGCGGAACTCGACGACCTCGACACCGCCGCCTTCGAGTCGCCGTCCGCCGAGGAGGAGGAGGCGACCAAGTGCCCG
CAGTCGGTCATGCACTCCGCCGACGAGTTCCATGGGAGGGGCCGCATGGTGGAGTTGTCGTGCGGGCTGACGCTGGGGGT
GACCCTAAGATCGCGGTGCTGAGCAAGGGGGAGCAACCGATCATGGTGTCGCAGTTCATGATGGAGCTTCGGGGGCTAAA
GACCGTCGACGGCGAGGACCCGCCGCACATCCTCCACTTCAACCCACGCCTCCGCGGTGACTGGAGCAGCAGGCCGGTGA
TTGAGCAGAACACCTGCTACCGAATGCAGTGGGGCGCCCCGCTCCGCTGTGAGGGCTGGAAGTCCCACTCTGATGAGGAG
ACCGGTTGGGGACCCCTGCAATTCCAGTTTGATTATGTTAGTTCAGGTGAATTATGTGAAATTTGTTGATCGAGTGAATA
ATTTTTGGAGTTTGAGAACTGAATTCTGGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57159.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis