Browse Element(s) Details


Os.51937.1.S1_a_at

Description gb:AK100100.1
DB_XREF= gi:32985309
TID=Os.51937.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004E20, full insert sequence.
FL= gb:AK101244.1 gb:AK100100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0967011/11galactosyltransferase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09610Os.49641.1.S1_at11/117+5100809..5105597Protein kinase domain containing protein, expressed
LOC_Os07g09620OsAffx.16178.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09620Os.51360.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09630Os.50554.1.S1_at11/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09630Os.53809.1.S1_at1/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09640OsAffx.5266.1.S1_x_at11/117+5118922..5119329hypothetical protein
LOC_Os07g09640OsAffx.9275.1.S1_x_at1/117+5118922..5119329hypothetical protein
LOC_Os07g09650OsAffx.5267.1.S1_at10/117+5121996..5122814hypothetical protein
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09690Os.23410.1.A1_at11/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09690Os.57159.1.S1_x_at1/117+5149666..5153837galactosyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51937.1.S1_a_at--1035--4211Chr07:5127477..5127501 (25 bp)
CCGGCACGATGTCAGGTTCTACCAG
LOC_Os07g09670
Os.51937.1.S1_a_at--1107--1491Chr07:5127406..5127430 (25 bp)
AGCACATGATCTGCCTCTGGAGAAA
LOC_Os07g09670
Os.51937.1.S1_a_at--339--5511Chr07:5127385..5127409 (25 bp)
GAAAACTGCAGTCCGGAAGCTCACG
LOC_Os07g09670
Os.51937.1.S1_a_at--1065--731Chr07:5127297..5127321 (25 bp)
ATGTTAACTCGTAAGCTCAGCTCGC
LOC_Os07g09670
Os.51937.1.S1_a_at--530--9651Chr07:5127281..5127305 (25 bp)
TCAGCTCGCTGTTGGAACACCAGAA
LOC_Os07g09670
Os.51937.1.S1_a_at--1119--6171Chr07:5127224..5127248 (25 bp)
GAGGAGCGCTCATCTTCTGGACTGG
LOC_Os07g09670
Os.51937.1.S1_a_at--846--4031Chr07:5127184..5127208 (25 bp)
CGTTCATTCTTTTGGTCGGTGGCTC
LOC_Os07g09670
Os.51937.1.S1_a_at--797--7531Chr07:5127166..5127190 (25 bp)
GTGGCTCCGTTTCAAGCTGCTGATT
LOC_Os07g09670
Os.51937.1.S1_a_at--354--7931Chr07:5127105..5127129 (25 bp)
GGATTCTTTCGCCTGTTGATATTTA
LOC_Os07g09670
Os.51937.1.S1_a_at--220--9191Chr07:5127011..5127035 (25 bp)
TGCCGGCGGCATGTTTTGTGTATAA
LOC_Os07g09670
Os.51937.1.S1_a_at--371--231Chr07:5126952..5126976 (25 bp)
ATATTCGGTGGACTCCTATTGGCTG
LOC_Os07g09670
Target Sequence 
CCGGCACGATGTCAGGTTCTACCAGTCTGGCTGCTTCGACGGCTACTTCACGGCTCACTATCAGTCCCCTCAGCACATGA
TCTGCCTCTGGAGAAAACTGCAGTCCGGAAGCTCACGGTGCTGCAACGTGAGATGACAATGGCAGCAAAAATTAGCCGTA
TTTTGGAGCAAATAGAGACGATGTTAACTCGTAAGCTCAGCTCGCTGTTGGAACACCAGAAAATCATCAGCATTCAGCGA
TGCTGACGGTTCGGAGGAGCGCTCATCTTCTGGACTGGACCTGATATATGATTCGTTCATTCTTTTGGTCGGTGGCTCCG
TTTCAAGCTGCTGATTTCTGACACCTGATCAATGATGTTCTTGCCTTCTTGGGGATTCTTTCGCCTGTTGATATTTATAC
TCGCGTCAAATTTATTTGACCTAGGAATTTTTGAGGCTGGTGGTGGTGGTGGTGGCGGCGGTGGTATGCCGGCGGCATGT
TTTGTGTATAAAAAGGATTTTATGAGTTTTACTGTTTGTGAGTATATATTCGGTGGACTCCTATTGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51937.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis