Browse Element(s) Details


Os.49641.1.S1_at

Description gb:AK063365.1
DB_XREF= gi:32973383
TID=Os.49641.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D08, full insert sequence.
FL= gb:AK063365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0961011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09580Os.13645.1.S1_at7/117+5069371..5075921aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os07g09590NANA7+5080419..5083090bHLH transcription factor, putative
LOC_Os07g09600Os.10821.1.S1_at11/117+5093980..5097806Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g09610Os.49641.1.S1_at11/117+5100809..5105597Protein kinase domain containing protein, expressed
LOC_Os07g09620OsAffx.16178.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09620Os.51360.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09630Os.50554.1.S1_at11/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09630Os.53809.1.S1_at1/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09640OsAffx.5266.1.S1_x_at11/117+5118922..5119329hypothetical protein
LOC_Os07g09640OsAffx.9275.1.S1_x_at1/117+5118922..5119329hypothetical protein
LOC_Os07g09650OsAffx.5267.1.S1_at10/117+5121996..5122814hypothetical protein
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0000152cellular_componentnuclear ubiquitin ligase complex
GO:0004672molecular_functionprotein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49641.1.S1_at--452--9931Chr07:5104684..5104708 (25 bp)
TACGGCAAGCTGCTCTGCGCACGCT
LOC_Os07g09610
Os.49641.1.S1_at--107--7531Chr07:5104829..5104853 (25 bp)
GTGGAGCTCCCGTCGATGATGCTGT
LOC_Os07g09610
Os.49641.1.S1_at--698--711Chr07:5104844..5104868 (25 bp)
ATGATGCTGTCCTCGAGAGCTTGTC
LOC_Os07g09610
Os.49641.1.S1_at--482--10811Chr07:5104864..5104888 (25 bp)
TTGTCTGCGGCTGTGTTCTTTGAAA
LOC_Os07g09610
Os.49641.1.S1_at--1072--5591Chr07:5104885..5105295 (25 bp)
GAAATTCAGCTGTACAAGTCAGAAG
LOC_Os07g09610
Os.49641.1.S1_at--515--7611Chr07:5105301..5105325 (25 bp)
GGGAATTACCTGATGGATCTGAAGA
LOC_Os07g09610
Os.49641.1.S1_at--250--6251Chr07:5105312..5105336 (25 bp)
GATGGATCTGAAGAGGCTTTCTGGC
LOC_Os07g09610
Os.49641.1.S1_at--987--4891Chr07:5105342..5105366 (25 bp)
GCTTCAATACCTCAACATATGCTCA
LOC_Os07g09610
Os.49641.1.S1_at--701--10131Chr07:5105359..5105383 (25 bp)
TATGCTCAGAGTTAAGCTCCAAGTT
LOC_Os07g09610
Os.49641.1.S1_at--664--10751Chr07:5105382..5105406 (25 bp)
TTGAGAGCAATTAACTGAGGCGGTA
LOC_Os07g09610
Os.49641.1.S1_at--928--5591Chr07:5105407..5105431 (25 bp)
GAAATTAACAGTCTCCTCCAAGGAA
LOC_Os07g09610
Target Sequence 
TACGGCAAGCTGCTCTGCGCACGCTTCGCCGGCGCCGCCGGCGTCCGCCGCATCATCCGCAGCTACCTCGCCGCCACCGA
CGACGCGCCCTCCTCTTCCTCCTCCGCCGGTGGTGGCAGTGGCAGAGGTGAGGCTGGCCATGGCGGTGGAGCTCCCGTCG
ATGATGCTGTCCTCGAGAGCTTGTCTGCGGCTGTGTTCTTTGAAATTCAGCTGTACAAGTCAGAAGGGGAAGGGAATTAC
CTGATGGATCTGAAGAGGCTTTCTGGCCCACAGCTTCAATACCTCAACATATGCTCAGAGTTAAGCTCCAAGTTGAGAGC
AATTAACTGAGGCGGTAGAAATTAACAGTCTCCTCCAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis