Browse Element(s) Details


Os.13645.1.S1_at

Description gb:AK070547.1
DB_XREF= gi:32980571
TID=Os.13645.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13645 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058K15, full insert sequence.
FL= gb:AK070547.1 gb:AK059129.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g095807/11aminoacyl-tRNA synthetase family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09550NANA7+5053585..5055489hypothetical protein
LOC_Os07g09560OsAffx.5265.1.S1_at11/117+5060422..5061417ankyrin repeat family protein, putative
LOC_Os07g09570OsAffx.16177.1.S1_at11/117+5063231..5063748hypothetical protein
LOC_Os07g09580Os.13645.1.S1_at7/117+5069371..5075921aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os07g09590NANA7+5080419..5083090bHLH transcription factor, putative
LOC_Os07g09600Os.10821.1.S1_at11/117+5093980..5097806Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g09610Os.49641.1.S1_at11/117+5100809..5105597Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0016298molecular_functionlipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13645.1.S1_at--812--8731Chr07:5069687..5069711 (25 bp)
TGTACACTACACGAAGGGCGCGCAT
LOC_Os07g09580
Os.13645.1.S1_at--515--3971Chr07:5069662..5069686 (25 bp)
CGGTCGCTGCTGTATTATGTCCAGA
LOC_Os07g09580
Os.13645.1.S1_at--483--9131Chr07:5069629..5069653 (25 bp)
TGCTGTGTTGCTGCCAGATACAAAC
LOC_Os07g09580
Os.13645.1.S1_at--916--2511Chr07:5069607..5069631 (25 bp)
AACTTGTAGCCTCCATTTGTTTAGC
LOC_Os07g09580
Os.13645.1.S1_at--587--3091Chr07:5069524..5069548 (25 bp)
AATACACCTAAGTGCTGCTCTTCTC
LOC_Os07g09580
Os.13645.1.S1_at--274--7071Chr07:5069448..5069472 (25 bp)
GTAAGGCCTGTAGCTCTTGTATTTA
LOC_Os07g09580
Os.13645.1.S1_at--708--6651Chr07:5069385..5069409 (25 bp)
GTTGATGACCTGATACTACTGAGCT
LOC_Os07g09580
Os.13645.1.S1_at--48--7871Chr07:5069336..5069360 (25 bp)
GGTTTGTTTGGAAGTCGCCTTTGCG
NONE
Os.13645.1.S1_at--397--4311Chr07:5069319..5069343 (25 bp)
CCTTTGCGTTTATTTCTGCCTGAGA
NONE
Os.13645.1.S1_at--1128--5691Chr07:5069273..5069297 (25 bp)
GACTCTTTGGAGTTTGGGATTACCT
NONE
Os.13645.1.S1_at--266--1351Chr07:5069233..5069257 (25 bp)
AGAGATTCTTGTTTGGATTCCGAAA
NONE
Target Sequence 
TGTACACTACACGAAGGGCGCGCATCGGTCGCTGCTGTATTATGTCCAGACTGATTGATGCTGTGTTGCTGCCAGATACA
AACTTGTAGCCTCCATTTGTTTAGCTCTAGGCGNGATACTGTTGTCGGGAAATTCTTGNCAACATTCATATGGTGGAAAC
TTGTAATACACCTAAGTGCTGCTCTTCTCGGCATNTCTTACGGCTATATTCCACNTTGTAGAATGTAGTTTTTGAGTCTA
AGTAAGGCCTGTAGCTCTTGTATTTATATCTGTCAACCTGATTAGATTGGTACATCTGTGTGCAGTTGATGACCTGATAC
TACTGAGCTAGTNAGGATTTCTCCAGCTAAGGTGGGTTTGTTTGGAAGTCGCCTTTGCGTTTATTTCTGCCTGAGAAGAA
CGGAAGATGCAGCTGAAGACTCTTTGGAGTTTGGGATTACCTTCCCAAGGGATTTCTAGAGATTCTTGTTTGGATTCCGA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13645.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis