Browse Element(s) Details


OsAffx.5265.1.S1_at

Description tigr:9635.m00919
TID=OsAffx.5265.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ankyrin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0956011/11ankyrin repeat family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09540Os.47463.1.S1_x_at5/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09540Os.14491.2.S1_x_at4/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09550NANA7+5053585..5055489hypothetical protein
LOC_Os07g09560OsAffx.5265.1.S1_at11/117+5060422..5061417ankyrin repeat family protein, putative
LOC_Os07g09570OsAffx.16177.1.S1_at11/117+5063231..5063748hypothetical protein
LOC_Os07g09580Os.13645.1.S1_at7/117+5069371..5075921aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os07g09590NANA7+5080419..5083090bHLH transcription factor, putative

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5265.1.S1_at--397--6171Chr07:5060878..5060902 (25 bp)
GAGGAGTCCCGGTGCAAGAACCTGC
LOC_Os07g09560
OsAffx.5265.1.S1_at--1020--2571Chr07:5060971..5060995 (25 bp)
AACGGTGACTACTTCGAGCTCGGCG
LOC_Os07g09560
OsAffx.5265.1.S1_at--355--10631Chr07:5061115..5061139 (25 bp)
TTCGACATCTTCCTTGTCTCCAACA
LOC_Os07g09560
OsAffx.5265.1.S1_at--1158--7071Chr07:5061202..5061226 (25 bp)
GTCAAGTTCAACCTCGAACACCTGA
LOC_Os07g09560
OsAffx.5265.1.S1_at--1116--2471Chr07:5061218..5061242 (25 bp)
AACACCTGAGGTGGGTACACATGCT
LOC_Os07g09560
OsAffx.5265.1.S1_at--879--8611Chr07:5061229..5061253 (25 bp)
TGGGTACACATGCTCACCGTCATAG
LOC_Os07g09560
OsAffx.5265.1.S1_at--91--9611Chr07:5061248..5061272 (25 bp)
TCATAGCCTGCCTTGCCATGATCGT
LOC_Os07g09560
OsAffx.5265.1.S1_at--608--671Chr07:5061280..5061304 (25 bp)
ATGACCTCCGTCTACCAAGAGGTGG
LOC_Os07g09560
OsAffx.5265.1.S1_at--98--8471Chr07:5061302..5061326 (25 bp)
TGGCCGGCGTACCTGGTGATCACCA
LOC_Os07g09560
OsAffx.5265.1.S1_at--164--9291Chr07:5061340..5061364 (25 bp)
TCCGGTCGTCGTGATACTCATATTA
LOC_Os07g09560
OsAffx.5265.1.S1_at--295--91Chr07:5061361..5061385 (25 bp)
ATTAGGGAAGGAGGCTTTCTACATA
LOC_Os07g09560
Target Sequence 
GAGGAGTCCCGGTGCAAGAACCTGCAGCACCTCCCGCCGGTGGCGACGTACCAGTCGCTGCGCAGGCGCAGCCACAGGTC
AGCTGGCTCCGGCAACGGTGACTACTTCGAGCTCGGCGTCGGCACCTACACCCTCGTGGCCACTCTCATCGCCACCGTCA
CCTTCGCCGCCACCTTCACCATGCCCGGCGGCTACAACCAGACCTCCGGCCTCGCCATCCACGCCGACCGCGCGGCGTTC
GACATCTTCCTTGTCTCCAACACCGTCGCCATGTGCAGCTCCATCACCGTCGTCTTCTGCTTCATCTGGGCGTGGCGCGA
CCCCGTCAAGTTCAACCTCGAACACCTGAGGTGGGTACACATGCTCACCGTCATAGCCTGCCTTGCCATGATCGTCTCCC
TCATGACCTCCGTCTACCAAGAGGTGGCCGGCGTACCTGGTGATCACCATCGGCGCCTGCACTCCGGTCGTCGTGATACT
CATATTAGGGAAGGAGGCTTTCTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis