Browse Element(s) Details


OsAffx.16177.1.S1_at

Description tigr:9635.m00920
TID=OsAffx.16177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0957011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09540Os.47463.1.S1_x_at5/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09540Os.14491.2.S1_x_at4/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09550NANA7+5053585..5055489hypothetical protein
LOC_Os07g09560OsAffx.5265.1.S1_at11/117+5060422..5061417ankyrin repeat family protein, putative
LOC_Os07g09570OsAffx.16177.1.S1_at11/117+5063231..5063748hypothetical protein
LOC_Os07g09580Os.13645.1.S1_at7/117+5069371..5075921aminoacyl-tRNA synthetase family, putative, expressed
LOC_Os07g09590NANA7+5080419..5083090bHLH transcription factor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16177.1.S1_at--652--8611Chr07:5063672..5063696 (25 bp)
TGGTGCAGGTCACACACTGGCCCAA
LOC_Os07g09570
OsAffx.16177.1.S1_at--986--8371Chr07:5063654..5063678 (25 bp)
GGCCCAATGGCGATAAGGAACTTCT
LOC_Os07g09570
OsAffx.16177.1.S1_at--309--951Chr07:5063639..5063663 (25 bp)
AGGAACTTCTTCACAGGCGAGACGT
LOC_Os07g09570
OsAffx.16177.1.S1_at--689--5591Chr07:5063614..5063638 (25 bp)
GAAATACAGCCTCACTAAGGCGCTT
LOC_Os07g09570
OsAffx.16177.1.S1_at--948--9771Chr07:5063599..5063623 (25 bp)
TAAGGCGCTTGTGGCGTTCTACCCG
LOC_Os07g09570
OsAffx.16177.1.S1_at--123--731Chr07:5063418..5063442 (25 bp)
ATGTACCTCCGAGGCTCCGATGTGG
LOC_Os07g09570
OsAffx.16177.1.S1_at--390--10071Chr07:5063388..5063412 (25 bp)
TAGTGCTCAGCCTGGCGAGCATTGC
LOC_Os07g09570
OsAffx.16177.1.S1_at--89--5991Chr07:5063329..5063353 (25 bp)
GAGACGCCGCACCTGTATCGGGACT
LOC_Os07g09570
OsAffx.16177.1.S1_at--290--10151Chr07:5063314..5063338 (25 bp)
TATCGGGACTCGGATGTGCTTCGAC
LOC_Os07g09570
OsAffx.16177.1.S1_at--535--9091Chr07:5063282..5063306 (25 bp)
TGCTCACCACATGTGCCACGTGTAT
LOC_Os07g09570
OsAffx.16177.1.S1_at--225--4371Chr07:5063267..5063291 (25 bp)
CCACGTGTATTATGCTAGGTCGCTA
LOC_Os07g09570
Target Sequence 
TGGTGCAGGTCACACACTGGCCCAATGGCGATAAGGAACTTCTTCACAGGCGAGACGTGAAATACAGCCTCACTAAGGCG
CTTGTGGCGTTCTACCCGTTCGCCGGCCAGCTTGGCGTCGATGGAGCTGGCCACATCCAAATCGACTATACCGGTCATGT
ACCTCCGAGGCTCCGATGTGGCGGCGTAGTGCTCAGCCTGGCGAGCATTGCCCGTGCCTCCGCCGAGGCGCTGTTGCCGC
CGACGGAGACGCCGCACCTGTATCGGGACTCGGATGTGCTTCGACCACAAGCTGCTCACCACATGTGCCACGTGTATTAT
GCTAGGTCGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis