Browse Element(s) Details


OsAffx.5266.1.S1_x_at

Description tigr:9635.m00928
TID=OsAffx.5266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0964011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09600Os.10821.1.S1_at11/117+5093980..5097806Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g09610Os.49641.1.S1_at11/117+5100809..5105597Protein kinase domain containing protein, expressed
LOC_Os07g09620OsAffx.16178.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09620Os.51360.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09630Os.50554.1.S1_at11/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09630Os.53809.1.S1_at1/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09640OsAffx.5266.1.S1_x_at11/117+5118922..5119329hypothetical protein
LOC_Os07g09640OsAffx.9275.1.S1_x_at1/117+5118922..5119329hypothetical protein
LOC_Os07g09650OsAffx.5267.1.S1_at10/117+5121996..5122814hypothetical protein
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5266.1.S1_x_at--872--9271Chr07:5119218..5119242 (25 bp)
TCCTGGTGGAGCTGCCTCACCATCT
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--936--2151Chr07:5119182..5119206 (25 bp)
ACAGCGCTGAGGCAAACCGCGCACT
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--192--8711Chr07:5119142..5119166 (25 bp)
TGTCCGAGATCTCGCCGTTGTCATG
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--36--6051Chr07:5119137..5119161 (25 bp)
GAGATCTCGCCGTTGTCATGGGCTC
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--311--471Chr07:5119134..5119158 (25 bp)
ATCTCGCCGTTGTCATGGGCTCGCA
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--425--9631Chr07:5119122..5119146 (25 bp)
TCATGGGCTCGCACGTACGGGAACG
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--1079--8171Chr07:5119103..5119127 (25 bp)
GGAACGACGGGAGGCACGCGATGGT
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--354--6251Chr07:5119084..5119108 (25 bp)
GATGGTGGCGGCGTCTAGGCCGAAC
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--825--4011Chr07:5119073..5119097 (25 bp)
CGTCTAGGCCGAACCTCGGCGGCGT
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--1120--5591Chr07:5119024..5119048 (25 bp)
GACAAGTGGACGATCACGCCGACGA
LOC_Os07g09640
OsAffx.5266.1.S1_x_at--891--1851Chr07:5119003..5119027 (25 bp)
ACGACGGGCAATGCGGAGAGCTCGA
LOC_Os07g09640
Target Sequence 
TCCTGGTGGAGCTGCCTCACCATCTCCCCCTCGTCGACAGCGCTGAGGCAAACCGCGCACTCGACCGACGCCGCCGTGTC
CGAGATCTCGCCGTTGTCATGGGCTCGCACGTACGGGAACGACGGGAGGCACGCGATGGTGGCGGCGTCTAGGCCGAACC
TCGGCGGCGTCGGCCGCTGCTGCTCCTGCTCCATGACAAGTGGACGATCACGCCGACGACGGGCAATGCGGAGAGCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5266.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis