Browse Element(s) Details


Os.51360.1.S1_at

Description gb:AK062637.1
DB_XREF= gi:32972655
TID=Os.51360.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D04, full insert sequence.
FL= gb:AK062637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0962011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09590NANA7+5080419..5083090bHLH transcription factor, putative
LOC_Os07g09600Os.10821.1.S1_at11/117+5093980..5097806Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g09610Os.49641.1.S1_at11/117+5100809..5105597Protein kinase domain containing protein, expressed
LOC_Os07g09620OsAffx.16178.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09620Os.51360.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09630Os.50554.1.S1_at11/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09630Os.53809.1.S1_at1/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09640OsAffx.5266.1.S1_x_at11/117+5118922..5119329hypothetical protein
LOC_Os07g09640OsAffx.9275.1.S1_x_at1/117+5118922..5119329hypothetical protein
LOC_Os07g09650OsAffx.5267.1.S1_at10/117+5121996..5122814hypothetical protein
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51360.1.S1_at--1143--7871Chr07:5107660..5107684 (25 bp)
GGATTCCGGCCGTAAGACGATGACT
LOC_Os07g09620
Os.51360.1.S1_at--713--5771Chr07:5107645..5107669 (25 bp)
GACGATGACTCGTAGGACGACGTGT
LOC_Os07g09620
Os.51360.1.S1_at--881--1851Chr07:5107629..5107653 (25 bp)
ACGACGTGTGCGCATGCGTATAGTA
LOC_Os07g09620
Os.51360.1.S1_at--350--8691Chr07:5107623..5107647 (25 bp)
TGTGCGCATGCGTATAGTAGTATAG
LOC_Os07g09620
Os.51360.1.S1_at--459--10071Chr07:5107601..5107625 (25 bp)
TAGTGCAATTAATGTGATTCCACGT
LOC_Os07g09620
Os.51360.1.S1_at--1066--7391Chr07:5107588..5107612 (25 bp)
GTGATTCCACGTGTATAACGTTGTG
LOC_Os07g09620
Os.51360.1.S1_at--841--8631Chr07:5107565..5107589 (25 bp)
TGGGTTAATTGTGCCACGTCAGATA
LOC_Os07g09620
Os.51360.1.S1_at--1052--7271Chr07:5107555..5107579 (25 bp)
GTGCCACGTCAGATATATGTACTAA
LOC_Os07g09620
Os.51360.1.S1_at--977--3731Chr07:5107534..5107558 (25 bp)
CTAATGTACGGTGAGATGTATCTAC
LOC_Os07g09620
Os.51360.1.S1_at--127--751Chr07:5107519..5107543 (25 bp)
ATGTATCTACCGTACGCTGGAGTTT
LOC_Os07g09620
Os.51360.1.S1_at--877--4131Chr07:5107505..5107529 (25 bp)
CGCTGGAGTTTGTACGGCTATCGTT
LOC_Os07g09620
Target Sequence 
GGATTCCGGCCGTAAGACGATGACTCGTAGGACGACGTGTGCGCATGCGTATAGTAGTATAGTGCAATTAATGTGATTCC
ACGTGTATAACGTTGTGGGTTAATTGTGCCACGTCAGATATATGTACTAATGTACGGTGAGATGTATCTACCGTACGCTG
GAGTTTGTACGGCTATCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis