Browse Element(s) Details


Os.53809.1.S1_at

Description gb:AK100194.1
DB_XREF= gi:32985403
TID=Os.53809.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036O10, full insert sequence.
FL= gb:AK100194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g096301/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09600Os.10821.1.S1_at11/117+5093980..5097806Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g09610Os.49641.1.S1_at11/117+5100809..5105597Protein kinase domain containing protein, expressed
LOC_Os07g09620OsAffx.16178.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09620Os.51360.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09630Os.50554.1.S1_at11/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09630Os.53809.1.S1_at1/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09640OsAffx.5266.1.S1_x_at11/117+5118922..5119329hypothetical protein
LOC_Os07g09640OsAffx.9275.1.S1_x_at1/117+5118922..5119329hypothetical protein
LOC_Os07g09650OsAffx.5267.1.S1_at10/117+5121996..5122814hypothetical protein
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004656molecular_functionprocollagen-proline 4-dioxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53809.1.S1_at--277--5071Chr10:13359305..13359329 (25 bp)
GCAGCGTCCCTGGTTGTCGATTTAC
NONE
Os.53809.1.S1_at--1018--10791Chr10:13359292..13359316 (25 bp)
TTGTCGATTTACTCCTCTGTTGCCT
NONE
Os.53809.1.S1_at--821--8491Chr10:13359114..13359138 (25 bp)
TGGCAGCGCACAACGGTGGTGGGCT
NONE
Os.53809.1.S1_at--902--7051Chr10:13358893..13358917 (25 bp)
GTAATCTTTCCGGTCTCAATAGTCA
NONE
Os.53809.1.S1_at--96--10651Chr10:13358886..13358910 (25 bp)
TTCCGGTCTCAATAGTCAAGAGTGA
NONE
Os.53809.1.S1_at--193--8571Chr10:13358853..13358877 (25 bp)
TGGTTTTGTGGTTCATGGGTGTAAT
NONE
Os.53809.1.S1_at--410--3513Chr10:18496791..18496811 (21 bp)
CATGGGTGTAATTCGATCGACCGCG
NONE
Os.53809.1.S1_at--857--7011Chr10:13358796..13358820 (25 bp)
GTACTTTTTCCTTTCCAAATTCATG
NONE
Os.53809.1.S1_at--640--10291Chr10:13358790..13358814 (25 bp)
TTTCCTTTCCAAATTCATGTGCCTA
NONE
Os.53809.1.S1_at--461--3511Chr10:13358775..13358799 (25 bp)
CATGTGCCTAACTTTTAAATATTGG
NONE
Os.53809.1.S1_at--231--8976Chr08:14049995..14050021 (25 bp)
TGAAATTCACTGTTAAATTTGCTTG
NONE
Target Sequence 
GCAGCGTCCCTGGTTGTCGATTTACTCCTCTGTTGCCTCGCCCTCGACGGTGCTCATGCAGCGGGGGCGGCCGGCGGCAG
AGGCGAACAGAGGCGAAGCGAGCTCAGGTGGGCGGCGGTGGAGGTGGACGCGGAGCAAGCTATGGCGGCCGCCGGCGGAG
GTAGGCCAAGCTGGGCTGCGCGTAGGTGGTGTGGCAGCGCACAACGGTGGTGGGCTGCGTGCTCGCCACCTGCGCCGCTG
TGAGGGAGGTGAGGCAGGGAAAAGAGAGAGATAGAGGGGATTGGGGAAAGAGAGAGAACAGAGAGAAGTAGAGAGGGTTA
GAAATTTATAGGGGGGGTAATCTTTCCGGTCTCAATAGTCAAGAGTGAAAAATGTCTGGTTTTGTGGTTCATGGGTGTAA
TTCGATCGACCGCGATAGTTCAGGGGGTAATTCGTACTTTTTCCTTTCCAAATTCATGTGCCTAACTTTTAAATATTGGT
TGTGACTAGAAAAAATGCCCGTGCGTTGCAACGGGTGAAGGCTTTTTTAATCTTTTTATTGTTATATGTTTTATTTAAGA
TGAAATTCACTGTTAAATTTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis