Browse Element(s) Details


OsAffx.9275.1.S1_x_at

Description gb:NM_192132.1
DB_XREF= gi:34911347
GEN=P0034C09.5
TID=OsAffx.9275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0034C09.5 (P0034C09.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g096401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09600Os.10821.1.S1_at11/117+5093980..5097806Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g09610Os.49641.1.S1_at11/117+5100809..5105597Protein kinase domain containing protein, expressed
LOC_Os07g09620OsAffx.16178.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09620Os.51360.1.S1_at11/117+5107342..5107987expressed protein
LOC_Os07g09630Os.50554.1.S1_at11/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09630Os.53809.1.S1_at1/117+5114981..5117453oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os07g09640OsAffx.5266.1.S1_x_at11/117+5118922..5119329hypothetical protein
LOC_Os07g09640OsAffx.9275.1.S1_x_at1/117+5118922..5119329hypothetical protein
LOC_Os07g09650OsAffx.5267.1.S1_at10/117+5121996..5122814hypothetical protein
LOC_Os07g09660NANA7+5124270..5124674hypothetical protein
LOC_Os07g09670Os.51937.1.S1_a_at11/117+5126929..5131268galactosyltransferase family protein, putative, expressed
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9275.1.S1_x_at--444--1631Chr01:28831610..28831634 (25 bp)
AGCGGTGGGCGAGCACGACAGCGAA
NONE
OsAffx.9275.1.S1_x_at--429--671Chr01:28831685..28831709 (25 bp)
ATGACGTCGGGCGTCACCGAAATGC
NONE
OsAffx.9275.1.S1_x_at--292--4651Chr01:28831695..28831719 (25 bp)
GCGTCACCGAAATGCGCGCGACTAT
NONE
OsAffx.9275.1.S1_x_at--358--5591Chr01:28831703..28831727 (25 bp)
GAAATGCGCGCGACTATGGCGTCAG
NONE
OsAffx.9275.1.S1_x_at--487--4591Chr01:28831712..28831736 (25 bp)
GCGACTATGGCGTCAGCAAGCTCGT
NONE
OsAffx.9275.1.S1_x_at--911--2672Chr01:28831729..28831753 (25 bp)
AAGCTCGTCGGCTGGTGCGGCCTTC
NONE
OsAffx.9275.1.S1_x_at--937--5772Chr01:28831781..28831805 (25 bp)
GACGAGAGCCACATGTTGATGCACT
NONE
OsAffx.9275.1.S1_x_at--1031--1372Chr01:28831785..28831809 (25 bp)
AGAGCCACATGTTGATGCACTCCTG
NONE
OsAffx.9275.1.S1_x_at--283--8611Chr01:28831808..28831832 (25 bp)
TGGTGGAACACGTGCCCGCAAGCCG
NONE
OsAffx.9275.1.S1_x_at--625--2171Chr01:28831815..28831839 (25 bp)
ACACGTGCCCGCAAGCCGAGATCTG
NONE
OsAffx.9275.1.S1_x_at--204--7231Chr01:28831858..28831882 (25 bp)
GTCGACGGCGCGAAGGCAGACCACA
NONE
Target Sequence 
AGCGGTGGGCGAGCACGACAGCGAAGCGGCGATGGGCGGCAGGCGGAGCGGACGGCGAGCGAGGAGGCTGGCACGATGAC
GTCGGGCGTCACCGAAATGCGCGCGACTATGGCGTCAGCAAGCTCGTCGGCTGGTGCGGCCTTCCCGCGGCAGACCGGGC
ACGAGGTGTGGGACGAGAGCCACATGTTGATGCACTCCTGGTGGAACACGTGCCCGCAAGCCGAGATCTGCCTCACCTTC
TCCCCCTCGTCGACGGCGCGAAGGCAGACCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9275.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis