Browse Element(s) Details


Os.48723.1.A1_at

Description gb:CR287842
DB_XREF= gi:44674408
DB_XREF=CR287842
CLONE=p867g10p3
TID=Os.48723.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48723 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g097108/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09690Os.23410.1.A1_at11/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09690Os.57159.1.S1_x_at1/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09700OsAffx.5269.1.S1_at10/117+5160577..5161802hypothetical protein
LOC_Os07g09710OsAffx.5270.1.S1_at11/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09710Os.48723.1.A1_at8/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed
LOC_Os07g09730NANA7+5185068..5186255hypothetical protein
LOC_Os07g09740OsAffx.5275.3.S1_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09740OsAffx.5275.1.S1_s_at11/117+5188105..5190099No apical meristem protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48723.1.A1_at--684--1311Chr07:5163463..5163487 (25 bp)
AGATGTGTTACTGTGTCCTTGGTCA
LOC_Os07g09710
Os.48723.1.A1_at--1157--7811Chr07:5163443..5163467 (25 bp)
GGTCAGTTCAACACATCCACTGGTT
LOC_Os07g09710
Os.48723.1.A1_at--640--10071Chr07:5163410..5163434 (25 bp)
TAGTGTGGCCTGAACTTCTTTACCA
LOC_Os07g09710
Os.48723.1.A1_at--310--1611Chr07:5163345..5163369 (25 bp)
AGCTGCATTTGTGTTACTGTCTGAG
LOC_Os07g09710
Os.48723.1.A1_at--124--3891Chr07:5163329..5163353 (25 bp)
CTGTCTGAGCTTCTTACTCCAATTA
LOC_Os07g09710
Os.48723.1.A1_at--512--1991Chr07:5163314..5163338 (25 bp)
ACTCCAATTATCTTCTTGCCAATCT
LOC_Os07g09710
Os.48723.1.A1_at--666--931Chr07:5163285..5163309 (25 bp)
AGGCAAGATGTTTTCCATTCTAGGA
LOC_Os07g09710
Os.48723.1.A1_at--345--10091NONE
TAGGAGTCTGAACACTGGCTGGCTT
NONE
Os.48723.1.A1_at--451--8291Chr07:5163245..5163269 (25 bp)
GGCTTGCTGTGTTTTCCTAGTTTCA
LOC_Os07g09710
Os.48723.1.A1_at--1132--9791NONE
TAAACTTTGTACTCGGATTCTCCTG
NONE
Os.48723.1.A1_at--1032--9431NONE
TCGGATTCTCCTGCTCTAATTAAAA
NONE
Target Sequence 
AGATGTGTTACTGTGTCCTTGGTCAGTTCAACACATCCACTGGTTCTTAAGAGTAGTGTGGCCTGAACTTCTTTACCAGA
TTATATCATTGTTCGGAGTTCAGACATTTTGAGCTAGGAGCTGCATTTGTGTTACTGTCTGAGCTTCTTACTCCAATTAT
CTTCTTGCCAATCTTGAGAGGCAAGATGTTTTCCATTCTAGGAGTCTGAACACTGGCTGGCTTGCTGTGTTTTCCTAGTT
TCAGTTATAAACTTTGTACTCGGATTCTCCTGCTCTAATTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48723.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis