Browse Element(s) Details


OsAffx.5270.1.S1_at

Description tigr:9635.m00935
TID=OsAffx.5270.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0971011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09680Os.12074.1.S1_at11/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09680Os.12233.2.S1_x_at1/117+5143385..5147047Ras-related protein ARA-3, putative, expressed
LOC_Os07g09690Os.23410.1.A1_at11/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09690Os.57159.1.S1_x_at1/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09700OsAffx.5269.1.S1_at10/117+5160577..5161802hypothetical protein
LOC_Os07g09710OsAffx.5270.1.S1_at11/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09710Os.48723.1.A1_at8/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed
LOC_Os07g09730NANA7+5185068..5186255hypothetical protein
LOC_Os07g09740OsAffx.5275.3.S1_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09740OsAffx.5275.1.S1_s_at11/117+5188105..5190099No apical meristem protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5270.1.S1_at--840--871Chr07:5164056..5164080 (25 bp)
ATGGCCGTCCCAATGGCGTCAAGAA
LOC_Os07g09710
OsAffx.5270.1.S1_at--703--1311Chr07:5164011..5164035 (25 bp)
AGATGGATCACATGGCCCTGTTCGA
LOC_Os07g09710
OsAffx.5270.1.S1_at--204--9391Chr07:5163990..5164014 (25 bp)
TCGATCTCTGCTCCGAGAGGTGGAT
LOC_Os07g09710
OsAffx.5270.1.S1_at--151--1731Chr07:5163879..5163903 (25 bp)
ACCAGAATCTGTCATTGTCCGAGCT
LOC_Os07g09710
OsAffx.5270.1.S1_at--1096--8591Chr07:5163851..5163875 (25 bp)
TGGTGCATTGGTTGTAGCTCAGTAC
LOC_Os07g09710
OsAffx.5270.1.S1_at--302--6451Chr07:5163806..5163830 (25 bp)
GATCAAATCCTACGTAGACCTCTGG
LOC_Os07g09710
OsAffx.5270.1.S1_at--187--1391Chr07:5163791..5163815 (25 bp)
AGACCTCTGGTATCTGATGGACTCG
LOC_Os07g09710
OsAffx.5270.1.S1_at--423--5631Chr07:5163712..5163736 (25 bp)
GACACTGAACACATTTTCCCTCATG
LOC_Os07g09710
OsAffx.5270.1.S1_at--414--9031Chr07:5163689..5163713 (25 bp)
TGCACATCCCTCACTGATTCTAGAT
LOC_Os07g09710
OsAffx.5270.1.S1_at--962--331Chr07:5163643..5163667 (25 bp)
ATAACTGTGCACTTAGCCAACTTCG
LOC_Os07g09710
OsAffx.5270.1.S1_at--22--5751Chr07:5163575..5163599 (25 bp)
GACGGACACTTTGGGTTCAGACTTG
LOC_Os07g09710
Target Sequence 
ATGGCCGTCCCAATGGCGTCAAGAACGCGCATCGCGAATCCTACGAGATGGATCACATGGCCCTGTTCGATCTCTGCTCC
GAGAGGTGGATATCATACCTGGAGGGACCAATGGCGACCCATCCGGAGATGAACAACATCGATGAGATCCTCCCTGAGCC
CCTTGAGATGTCGGTGTACCAGAATCTGTCATTGTCCGAGCTGAGTGGTGCATTGGTTGTAGCTCAGTACACGGATTATC
GAAGCGCGGAGATCAAATCCTACGTAGACCTCTGGTATCTGATGGACTCGGAGAAGCAGATTTGGGAGAAGAAGTATAGG
ATTGTTTTGGAGATGGATACCTGGGACACTGAACACATTTTCCCTCATGCACATCCCTCACTGATTCTAGATGATGGCAG
GATACTCATCTACATAACTGTGCACTTAGCCAACTTCGAAGGGCAATACACGAGGCGGGTGATGCGGTTATATGATCCGG
AGACGGACACTTTGGGTTCAGACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis