Browse Element(s) Details


OsAffx.14619.1.S1_x_at

Description tigr:9633.m00906
TID=OsAffx.14619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1043010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10380OsAffx.26812.2.S1_x_at11/115+5636801..5639210hypothetical protein
LOC_Os05g10390NANA5+5641108..5644389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10400NANA5+5645807..5648180transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.14491.2.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10410Os.47463.1.S1_x_at5/115+5648435..5651351transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10420OsAffx.14618.2.S1_at11/115+5657494..5657895hypothetical protein
LOC_Os05g10420OsAffx.14618.1.S1_x_at1/115+5657494..5657895hypothetical protein
LOC_Os05g10430OsAffx.14619.1.S1_at10/115+5659108..5659969hypothetical protein
LOC_Os05g10430OsAffx.14619.1.S1_x_at10/115+5659108..5659969hypothetical protein
LOC_Os05g10440Os.26886.6.S1_s_at7/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.26886.2.S1_s_at6/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.16467.1.S1_at4/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_x_at3/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.1755.1.S1_at2/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440Os.20851.1.A1_x_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10440OsAffx.14620.1.S1_at1/115+5663653..5669107transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10450NANA5+5669573..5670100hypothetical protein
LOC_Os05g10460Os.26886.1.S1_x_at4/115+5672145..5673819transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10470Os.26886.3.S1_x_at3/115+5674006..5675342transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10480OsAffx.14620.1.S1_at11/115+5678178..5678783expressed protein
LOC_Os05g10480OsAffx.14618.1.S1_x_at1/115+5678178..5678783expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14619.1.S1_x_at--899--2531Chr05:5659139..5659307 (25 bp)
AACTACTCAGCGACTTCAGTACGTG
LOC_Os05g10430
OsAffx.14619.1.S1_x_at--550--2053Chr08:6091958..6091977 (20 bp)
ACTTCAGTACGTGCCTCGACAAGAT
NONE
OsAffx.14619.1.S1_x_at--334--2451Chr05:5659336..5659360 (25 bp)
AACAATTTGGTTTATCGAGATCATC
LOC_Os05g10430
OsAffx.14619.1.S1_x_at--617--6071NONE
GAGTACGCAGTAAGAAAAATACTTT
NONE
OsAffx.14619.1.S1_x_at--156--6551Chr05:5659842..5659866 (25 bp)
GATTAGGTTGTGGTCGAGCACTCCC
LOC_Os05g10430
OsAffx.14619.1.S1_x_at--181--10451Chr05:5659844..5659868 (25 bp)
TTAGGTTGTGGTCGAGCACTCCCCA
LOC_Os05g10430
OsAffx.14619.1.S1_x_at--792--5971Chr05:5659874..5659898 (25 bp)
GAGAACGTTCTAGACAAATGCAGAT
LOC_Os05g10430
OsAffx.14619.1.S1_x_at--268--2291Chr05:5659889..5659913 (25 bp)
AAATGCAGATTTGTCGCAGCCAACC
LOC_Os05g10430
OsAffx.14619.1.S1_x_at--511--651Chr05:5659891..5659915 (25 bp)
ATGCAGATTTGTCGCAGCCAACCTA
LOC_Os05g10430
OsAffx.14619.1.S1_x_at--398--1251Chr05:5659895..5659919 (25 bp)
AGATTTGTCGCAGCCAACCTACCAA
LOC_Os05g10430
OsAffx.14619.1.S1_x_at--521--10251Chr05:5659898..5659922 (25 bp)
TTTGTCGCAGCCAACCTACCAACGA
LOC_Os05g10430
Target Sequence 
AACTACTCAGCGACTTCAGTACGTGCCTCGACAAGATCGGAACCATCATTGTCAACAATTTGGTTTATCGAGATCATCCA
AGCCTCAAGATACGCGTCGTACCAAAAGACGTCAGATCATATGATATCAAACGAGTACGCAGTAAGAAAAATACTTTTCA
GGAACAATTGAGCACTCGATTAGGTTGTGGTCGAGCACTCCCCATTATCGAGAACGTTCTAGACAAATGCAGATTTGTCG
CAGCCAACCTACCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14619.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis