Browse Element(s) Details


OsAffx.27690.1.S1_at

Description tigr:9634.m01782
TID=OsAffx.27690.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1794010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17920OsAffx.15478.1.S1_at10/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920Os.50906.1.S1_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.8356.1.S1_x_at2/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17920OsAffx.24024.1.S1_at1/116+10404660..10414296NB-ARC domain containing protein
LOC_Os06g17930OsAffx.15478.2.S1_at11/116+10419704..10426558NBS-LRR disease resistance protein, putative
LOC_Os06g17940OsAffx.27690.1.S1_at10/116+10431044..10433306hypothetical protein
LOC_Os06g17950Os.34061.1.S2_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S1_at11/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17950Os.34061.1.S3_at10/116+10434820..10440908disease resistance RPP13-like protein 3, putative, expressed
LOC_Os06g17960NANA6+10441638..10442048hypothetical protein
LOC_Os06g17970Os.50906.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17970Os.52342.1.S1_at11/116+10444083..10450096Leucine Rich Repeat family protein, expressed
LOC_Os06g17980OsAffx.27691.1.S1_at10/116+10453754..10454245hypothetical protein
LOC_Os06g17980OsAffx.27691.1.S1_x_at10/116+10453754..10454245hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27690.1.S1_at--763--3011Chr06:10431607..10431631 (25 bp)
AATGCATATGGCTTGCTGAAGCTCA
LOC_Os06g17940
OsAffx.27690.1.S1_at--631--8291Chr06:10431616..10431640 (25 bp)
GGCTTGCTGAAGCTCAATGGTTGAA
LOC_Os06g17940
OsAffx.27690.1.S1_at--773--3191Chr06:10431630..10431654 (25 bp)
CAATGGTTGAAGCTACAATCTTGGC
LOC_Os06g17940
OsAffx.27690.1.S1_at--224--1571Chr06:10431640..10431664 (25 bp)
AGCTACAATCTTGGCTATTTCTGGC
LOC_Os06g17940
OsAffx.27690.1.S1_at--456--3191Chr06:10431645..10431669 (25 bp)
CAATCTTGGCTATTTCTGGCAGAAA
LOC_Os06g17940
OsAffx.27690.1.S1_at--915--9431Chr06:10431659..10431683 (25 bp)
TCTGGCAGAAATCCAAATTGGTGGC
LOC_Os06g17940
OsAffx.27690.1.S1_at--342--8091NONE
GGAGCTGTGTTTGTGTGACCACACA
NONE
OsAffx.27690.1.S1_at--373--7471Chr06:10432442..10432466 (25 bp)
GTGTGACCACACATTTGAATTGAAT
LOC_Os06g17940
OsAffx.27690.1.S1_at--8--371Chr06:10432669..10432693 (25 bp)
ATAATTGAAGTATGGTGCAACACAA
LOC_Os06g17940
OsAffx.27690.1.S1_at--385--9811Chr06:10432694..10433038 (25 bp)
TAAAACCATTAACTTACCTCACAGG
LOC_Os06g17940
OsAffx.27690.1.S1_at--621--7571Chr06:10433038..10433062 (25 bp)
GGGCTGTACTCATCTTAAGTCTTAC
LOC_Os06g17940
Target Sequence 
AATGCATATGGCTTGCTGAAGCTCAATGGTTGAAGCTACAATCTTGGCTATTTCTGGCAGAAATCCAAATTGGTGGCTTG
GAGCTGTGTTTGTGTGACCACACATTTGAATTGAATATGGTATACAACATAATTGAAGTATGGTGCAACACAATAAAACC
ATTAACTTACCTCACAGGGGCTGTACTCATCTTAAGTCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27690.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis