Browse Element(s) Details


Os.46570.1.S1_at

Description gb:AK063299.1
DB_XREF= gi:32973317
TID=Os.46570.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (OSJNBa0057L21.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F01, full insert sequence.
FL= gb:AK063299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4172011/11Peroxidase family protein, expressed
LOC_Os12g112901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41660Os.46818.1.S1_at11/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41660Os.31623.1.S1_x_at1/1110+22105622..22107184Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41670NANA10+22113302..22114156hypothetical protein
LOC_Os10g41689OsAffx.30473.1.S1_x_at11/1110+22116469..22117530Photosystem II D2 protein, putative
LOC_Os10g41710Os.9219.1.S1_at10/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41710Os.49478.1.S1_at1/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46570.1.S1_at--1049--9351Chr10:22128599..22128623 (25 bp)
TCGACAAGAGCTACTACTCCCAGAT
LOC_Os10g41720
Os.46570.1.S1_at--123--411Chr10:22128408..22128432 (25 bp)
ATCAGGGCTAACTGCCGGAGGACCA
LOC_Os10g41720
Os.46570.1.S1_at--373--4491Chr10:22128395..22128419 (25 bp)
GCCGGAGGACCAATTAACTAGCTAG
LOC_Os10g41720
Os.46570.1.S1_at--552--2531Chr10:22128380..22128404 (25 bp)
AACTAGCTAGGAGCATGATGCCCAA
LOC_Os10g41720
Os.46570.1.S1_at--900--8851Chr10:22128365..22128389 (25 bp)
TGATGCCCAAGTGCTATAGTTAATT
LOC_Os10g41720
Os.46570.1.S1_at--883--251Chr10:22128286..22128310 (25 bp)
ATATGAGCACATCCAGCCAGAGCAT
LOC_Os10g41720
Os.46570.1.S1_at--910--10691Chr10:22128238..22128262 (25 bp)
TTGCCCTCCTGATCTTGTCAATGAT
LOC_Os10g41720
Os.46570.1.S1_at--385--6811Chr10:22128111..22128135 (25 bp)
GTTTTCCTTCTCTACTTCACTAGAA
LOC_Os10g41720
Os.46570.1.S1_at--540--8891Chr10:22128078..22128102 (25 bp)
TGAGTTGTACTTGATCACTGCCTTG
LOC_Os10g41720
Os.46570.1.S1_at--459--6451Chr10:22128066..22128090 (25 bp)
GATCACTGCCTTGAGATTCTTTTTG
LOC_Os10g41720
Os.46570.1.S1_at--648--9552Chr12:6081108..6081565 (25 bp)
TCTTTTTGTTTTGTACGTGGCTCGT
LOC_Os12g11290
Target Sequence 
TCGACAAGAGCTACTACTCCCAGATCCTCCACCGCCGCGGCGTCCTCGCCGTCGACCAGAAGCTCGGCGACCACGCCGCC
ACCGCCTGGATGGTCAACTTCCTCGGCACCACCGACTTCTTCTCCTCCATGTTCCCCTACGCCCTCAACAAGCTCGCCGC
CGTCGACGTCAAGACCGGCGCCGCCGGCGAGATCAGGGCTAACTGCCGGAGGACCAATTAACTAGCTAGGAGCATGATGC
CCAAGTGCTATAGTTAATTAATTAGAACATCCATCAAAGAAACAAACAGATTTAAAGAGAGAGAGATCGTAGTATATGAG
CACATCCAGCCAGAGCATATATGCACATTCATTCTTTTCTTTTGCCCTCCTGATCTTGTCAATGATTGCATCCATGATTC
TACTATACATTAGTAGTTGATTTCAGTAAAGATTTTAGCAAATTAATTTACTGGAGCTTAGCTAGTAGCACTTTAGTAAT
TTAGTAGTGTTTTCCTTCTCTACTTCACTAGAAGTACCTTGTGAGTTGTACTTGATCACTGCCTTGAGATTCTTTTTGTT
TTGTACGTGGCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis