Browse Element(s) Details


Os.46568.1.S1_at

Description gb:AK063367.1
DB_XREF= gi:32973385
TID=Os.46568.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative chlorophyll synthase (OSJNBa0057L21.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D11, full insert sequence.
FL= gb:AK063367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4176011/11chlorophyll a oxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41710Os.9219.1.S1_at10/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41710Os.49478.1.S1_at1/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015995biological_processchlorophyll biosynthesis
GO:0009507cellular_componentchloroplast
GO:0016630molecular_functionprotochlorophyllide reductase activity
GO:0046407molecular_functionchlorophyll a oxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46568.1.S1_at--1019--991Chr10:22144588..22144612 (25 bp)
AGGATGCTGTACCAGATGTCCCTCA
LOC_Os10g41760
Os.46568.1.S1_at--423--3311Chr10:22144543..22144567 (25 bp)
CACATCCCTTTCATGCACATACTAT
LOC_Os10g41760
Os.46568.1.S1_at--118--971Chr10:22144338..22144362 (25 bp)
AGGACCTACGGCTTGTGCTTGGGCA
LOC_Os10g41760
Os.46568.1.S1_at--927--2951Chr10:22144297..22144321 (25 bp)
AATGGCGCGAACGTATGGAACTGGC
LOC_Os10g41760
Os.46568.1.S1_at--790--7631Chr10:22144214..22144238 (25 bp)
GGGAGCAAACAGGTTGCCATTCAAT
LOC_Os10g41760
Os.46568.1.S1_at--100--3031Chr10:22144158..22144182 (25 bp)
AATGCTGCACTGACAGTAGCCTCTT
LOC_Os10g41760
Os.46568.1.S1_at--720--5651Chr10:22144147..22144171 (25 bp)
GACAGTAGCCTCTTTCAACTCTTGT
LOC_Os10g41760
Os.46568.1.S1_at--1145--3651Chr10:22144136..22144160 (25 bp)
CTTTCAACTCTTGTCGCATTTCTTG
LOC_Os10g41760
Os.46568.1.S1_at--1083--10091Chr10:22144095..22144119 (25 bp)
TATGGCCAGAACTATAGTCACTTAG
LOC_Os10g41760
Os.46568.1.S1_at--252--10811Chr10:22144048..22144072 (25 bp)
TTGTTTAGGCGTGCTGCGTTCATCC
LOC_Os10g41760
Os.46568.1.S1_at--639--551Chr10:22144012..22144036 (25 bp)
ATCCGCCTGAGCTTCTGGAGAGGAA
LOC_Os10g41760
Target Sequence 
AGGATGCTGTACCAGATGTCCCTCAACTTTGCTCCCTGGCTCAAGCACATCCCTTTCATGCACATACTATGGTCACATTT
TGGTGAGAAGGTCTTGAATGAGGACCTACGGCTTGTGCTTGGGCAGCAAGAGCGGATGATAAATGGCGCGAACGTATGGA
ACTGGCCAGTGTCATATGACAAGCTTGGTATCCGGTATCGGTTATGGAGAGACGCCATTGAGAGGGGAGCAAACAGGTTG
CCATTCAATAACCAAAGTGAGAGTGGATCATAGTAGCTGCAATGCTGCACTGACAGTAGCCTCTTTCAACTCTTGTCGCA
TTTCTTGGCGAGATGAAGATGACTATGGCCAGAACTATAGTCACTTAGTCAGAATATGTATATGCGCAGTTTGTTTAGGC
GTGCTGCGTTCATCCCTGCGTGGTTCATCCGCCTGAGCTTCTGGAGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis