Browse Element(s) Details


Os.46482.1.S1_at

Description gb:AK072336.1
DB_XREF= gi:32982359
TID=Os.46482.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044D03, full insert sequence.
FL= gb:AK072336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4179010/11intron maturase, type II family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0008380biological_processRNA splicing
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46482.1.S1_at--292--2991Chr10:22161937..22161961 (25 bp)
AATGTGCCTGTCAAATCTCTTGCAA
LOC_Os10g41790
Os.46482.1.S1_at--160--3071Chr10:22161950..22161974 (25 bp)
AATCTCTTGCAATCAGCTGGGCTGG
LOC_Os10g41790
Os.46482.1.S1_at--951--8331Chr10:22161969..22161993 (25 bp)
GGCTGGTTCCTAAGTGCCTAACTAG
LOC_Os10g41790
Os.46482.1.S1_at--393--6271Chr10:22161993..22162017 (25 bp)
GATGTCTGATTCCTACTCAGGGACA
LOC_Os10g41790
Os.46482.1.S1_at--1003--7951Chr10:22162118..22162142 (25 bp)
GGATCAAACTTTGCTGCCAGACTGT
LOC_Os10g41790
Os.46482.1.S1_at--297--9991Chr10:22162196..22162220 (25 bp)
TAGCGGCCTTACCAATCCTATTTAT
LOC_Os10g41790
Os.46482.1.S1_at--616--9251Chr10:22162211..22162235 (25 bp)
TCCTATTTATACATCTCCAGCGCAT
LOC_Os10g41790
Os.46482.1.S1_at--1024--371Chr10:22162244..22162268 (25 bp)
ATCACAGTGTACACATTCTGCCCAA
LOC_Os10g41790
Os.46482.1.S1_at--1008--6711Chr10:22162276..22162300 (25 bp)
GTTCGTGCAATTTTCTACTCATCTG
LOC_Os10g41790
Os.46482.1.S1_at--589--10011Chr10:22162356..22162380 (25 bp)
TAGCATCCTTGCTTTTTGGTAGATT
LOC_Os10g41790
Os.46482.1.S1_at--260--6891NONE
GTATTTGTTCTATCTGTTGGTTCTT
NONE
Target Sequence 
AATGTGCCTGTCAAATCTCTTGCAATCAGCTGGGCTGGTTCCTAAGTGCCTAACTAGATGTCTGATTCCTACTCAGGGAC
ATCAAATTTTGTGCAGCTTCAACTTCAACAATATTTCTCAATACTCAGGATTATATTGGATGCTTGCTGCGGTGAGAAAG
AAGCCAGAATGGACATTCAGAGGATCAAACTTTGCTGCCAGACTGTGCATCTGCATGCAGAACCAGCTGCTTACCGCCAA
GCTTATATTTTAGTAAGACTAGCGGCCTTACCAATCCTATTTATACATCTCCAGCGCATTTGGAAAAATCACAGTGTACA
CATTCTGCCCAAACGTCCTGTTCGTGCAATTTTCTACTCATCTGTAGAATGTTTTACAGAAAGCAGAGGTCACAGAATTT
ACTTATANNNGATACTAAGTAGCATCCTTGCTTTTTGGTAGATTTGCTTATCTATTGCTTTTTACCATATTGTGGTCTAA
TTAGGCTGATTGGATGCTTGGTCAGTTATTCTTAAAGATATGACTGGAAACTCTATCTAATAGAATTGTATTTGTTCTAT
CTGTTGGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis