Browse Element(s) Details


Os.20614.1.S1_at

Description gb:AK064083.1
DB_XREF= gi:32974101
TID=Os.20614.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposase (OSJNBa0062A24.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B05, full insert sequence.
FL= gb:AK064083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4183811/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein
LOC_Os10g41880OsAffx.14308.1.S1_at11/1110+22211550..22212242hypothetical protein
LOC_Os10g41880OsAffx.14308.1.S1_x_at11/1110+22211550..22212242hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20614.1.S1_at--332--151Chr10:22188105..22188129 (25 bp)
ATTACCGCTGCTTAGCTTCTTCGGT
LOC_Os10g41838
Os.20614.1.S1_at--298--4911Chr10:22188119..22188143 (25 bp)
GCTTCTTCGGTCTTGCTACTTTTTA
LOC_Os10g41838
Os.20614.1.S1_at--131--7151Chr10:22188128..22188152 (25 bp)
GTCTTGCTACTTTTTATCCCATGAG
LOC_Os10g41838
Os.20614.1.S1_at--508--4851Chr10:22188133..22188157 (25 bp)
GCTACTTTTTATCCCATGAGAATCA
LOC_Os10g41838
Os.20614.1.S1_at--1148--5951Chr10:22188150..22188174 (25 bp)
GAGAATCAGTTTGTATGCACTGCTT
LOC_Os10g41838
Os.20614.1.S1_at--1157--10771Chr10:22188160..22188184 (25 bp)
TTGTATGCACTGCTTGTATTTCCCC
LOC_Os10g41838
Os.20614.1.S1_at--375--4211Chr10:22188184..22188208 (25 bp)
CCCCTCTGTTTATCACTACAAGTAC
LOC_Os10g41838
Os.20614.1.S1_at--38--6831Chr10:22188191..22188215 (25 bp)
GTTTATCACTACAAGTACTCCTGCA
LOC_Os10g41838
Os.20614.1.S1_at--168--9851Chr10:22188200..22188224 (25 bp)
TACAAGTACTCCTGCAAATGACAAG
LOC_Os10g41838
Os.20614.1.S1_at--676--1991Chr10:22188207..22188231 (25 bp)
ACTCCTGCAAATGACAAGGCTATTT
LOC_Os10g41838
Os.20614.1.S1_at--33--8971Chr10:22188218..22188242 (25 bp)
TGACAAGGCTATTTATTTGAATGCT
LOC_Os10g41838
Target Sequence 
ATTACCGCTGCTTAGCTTCTTCGGTCTTGCTACTTTTTATCCCATGAGAATCAGTTTGTATGCACTGCTTGTATTTCCCC
CCCTCTGTTTATCACTACAAGTACTCCTGCAAATGACAAGGCTATTTATTTGAATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis