Browse Element(s) Details


Os.20614.3.S1_x_at

Description gb:CB638001
DB_XREF= gi:29632992
DB_XREF=OSJNEa05L14.r
CLONE=OSJNEa05L14
TID=Os.20614.3
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.20614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposase (OSJNBa0062A24.9), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1183011/11hAT family dimerisation domain containing protein, expressed
LOC_Os04g4975711/11purine permease family protein, putative, expressed
LOC_Os07g1534011/11hAT family dimerisation domain containing protein
LOC_Os10g4183811/11F-box protein interaction domain containing protein, expressed
LOC_Os02g221902/11HGA1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein
LOC_Os06g11780OsAffx.28215.1.S1_at10/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11780Os.57514.1.S1_x_at1/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11790Os.18671.1.S1_at11/116+6242662..6246718TLD family protein, expressed
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed
LOC_Os06g11840OsAffx.4803.1.S1_at10/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.1206.1.S1_x_at2/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_x_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005345molecular_functionpurine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20614.3.S1_x_at--352--6935Chr10:22186440..22186464 (25 bp)
GTATGGCTGCATTTAGTCCTATAGA
LOC_Os10g41838
Os.20614.3.S1_x_at--809--9795Chr10:22186498..22186522 (25 bp)
TAAGCTTGCACGGTTTTATCCTAAT
LOC_Os10g41838
Os.20614.3.S1_x_at--1141--8975Chr10:22186542..22186566 (25 bp)
TGAACCATCTTCCATCAGCATTGAA
LOC_Os10g41838
Os.20614.3.S1_x_at--115--1554Chr10:22186558..22186582 (25 bp)
AGCATTGAAACTCTTCCTCACTGAG
LOC_Os10g41838
Os.20614.3.S1_x_at--789--10677Chr11:727575..727598 (24 bp)
TTCCTCACTGAGATGCGTATAGATG
NONE
Os.20614.3.S1_x_at--439--2275Chr10:22186615..22186639 (25 bp)
AAATCTTGCTAATCTTTCCATTATG
LOC_Os10g41838
Os.20614.3.S1_x_at--800--2697Chr10:22186682..22186706 (25 bp)
AAGCTTCTCAAATTGGTTCTGGTAC
LOC_Os10g41838
Os.20614.3.S1_x_at--699--8595Chr10:22186701..22186725 (25 bp)
TGGTACTTCCAGTAGCAACAGCTAG
LOC_Os10g41838
Os.20614.3.S1_x_at--758--65910Chr11:727816..727839 (24 bp)
GATTGCTTGGTCACATTTATTGAGC
NONE
Os.20614.3.S1_x_at--59--357Chr10:22186862..22186886 (25 bp)
ATAAACCGCTTTCAAGCCATGAAGG
LOC_Os10g41838
Os.20614.3.S1_x_at--836--4835Chr10:22186901..22186925 (25 bp)
GCTACTCTTCCAAGCCACGAAGGAA
LOC_Os10g41838
Target Sequence 
GTATGGCTGCATTTAGTCCTATAGATAACTTTGCTAGTTGGGACAAAGATAAGTTGATTAAGCTTGCACGGTTTTATCCT
AATGATTTCTCAAGCACAGAGATGAACCATCTTCCATCAGCATTGAAACTCTTCCTCACTGAGATGCGTATAGATGAAAG
GTTTAGAAAAGTAAAAAATCTTGCTAATCTTTCCATTATGATTGTTGAAACAAAATTGCACAATAGACATGAGATTGTTT
ACAAGCTTCTCAAATTGGTTCTGGTACTTCCAGTAGCAACAGCTAGTGTTGAAAGAATATTTTCTGCCATGAATTATGTG
AAGAATAAATTGAGAANCAGGATGGGGGNATCAATACTTGAATGATTGCTTGGTCACATTTATTGAGCGTGAGATGTTTT
TGAAAGTCAAGGAGTGTGATATTATAAACCGCTTTCAAGCCATGAAGGAACGCAGAATTAAAGCTACTCTTCCAAGCCAC
GAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20614.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis