Browse Element(s) Details


OsAffx.15376.1.S1_at

Description tigr:9634.m01150
TID=OsAffx.15376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1176011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11730Os.12968.1.S1_at11/116+6207297..6213435RNA recognition motif family protein, expressed
LOC_Os06g11740Os.23073.1.S1_at11/116+6221593..6223682adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os06g11750OsAffx.15375.1.S1_at9/116+6226814..6228558hypothetical protein
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein
LOC_Os06g11780OsAffx.28215.1.S1_at10/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11780Os.57514.1.S1_x_at1/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11790Os.18671.1.S1_at11/116+6242662..6246718TLD family protein, expressed
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15376.1.S1_at--175--4591Chr06:6232169..6232193 (25 bp)
GCGCAGGCGCAGCACAGTACTACAC
LOC_Os06g11760
OsAffx.15376.1.S1_at--464--8391Chr06:6232174..6232198 (25 bp)
GGCGCAGCACAGTACTACACTGATC
LOC_Os06g11760
OsAffx.15376.1.S1_at--973--1171Chr06:6232184..6232208 (25 bp)
AGTACTACACTGATCGAGCTGAGAT
LOC_Os06g11760
OsAffx.15376.1.S1_at--55--9871Chr06:6232189..6232213 (25 bp)
TACACTGATCGAGCTGAGATATGGC
LOC_Os06g11760
OsAffx.15376.1.S1_at--1038--3851Chr06:6232193..6232217 (25 bp)
CTGATCGAGCTGAGATATGGCGTTG
LOC_Os06g11760
OsAffx.15376.1.S1_at--897--971Chr06:6232219..6232243 (25 bp)
AGGAGACGGTCCTGCAGCGGCCTTT
LOC_Os06g11760
OsAffx.15376.1.S1_at--561--5971Chr06:6232221..6232245 (25 bp)
GAGACGGTCCTGCAGCGGCCTTTTC
LOC_Os06g11760
OsAffx.15376.1.S1_at--630--3931Chr06:6232270..6232294 (25 bp)
CGGCGACGACGGTGTTTCTTGCTGC
LOC_Os06g11760
OsAffx.15376.1.S1_at--11--1871Chr06:6232275..6232299 (25 bp)
ACGACGGTGTTTCTTGCTGCTGCGA
LOC_Os06g11760
OsAffx.15376.1.S1_at--1025--3971Chr06:6232279..6232303 (25 bp)
CGGTGTTTCTTGCTGCTGCGACTGC
LOC_Os06g11760
OsAffx.15376.1.S1_at--458--4711Chr06:6232322..6232346 (25 bp)
GCGGCCGGTGGACCCGATGATCTGG
LOC_Os06g11760
Target Sequence 
GCGCAGGCGCAGCACAGTACTACACTGATCGAGCTGAGATATGGCGTTGGAGGAGACGGTCCTGCAGCGGCCTTTTCCGG
CGGCCGGCGGCGACGGGGAGGCGGCGACGACGGTGTTTCTTGCTGCTGCGACTGCGACGGAGGAGGGGCGGCGGCGGCCG
GTGGACCCGATGATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis