Browse Element(s) Details


Os.23073.1.S1_at

Description gb:AK059876.1
DB_XREF= gi:32969894
TID=Os.23073.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F09, full insert sequence.
FL= gb:AK059876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1174011/11adenosine 5'-phosphosulfate reductase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11710OsAffx.27571.1.S1_at11/116+6201141..6201791Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g11720Os.51664.1.S1_at11/116+6204614..6206558UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11730Os.12968.1.S1_at11/116+6207297..6213435RNA recognition motif family protein, expressed
LOC_Os06g11740Os.23073.1.S1_at11/116+6221593..6223682adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os06g11750OsAffx.15375.1.S1_at9/116+6226814..6228558hypothetical protein
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein
LOC_Os06g11780OsAffx.28215.1.S1_at10/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11780Os.57514.1.S1_x_at1/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11790Os.18671.1.S1_at11/116+6242662..6246718TLD family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23073.1.S1_at--655--2431Chr06:6223111..6223135 (25 bp)
AAAAGTGCCTATTCTGGTCGGCGCG
LOC_Os06g11740
Os.23073.1.S1_at--316--7811Chr06:6223126..6223150 (25 bp)
GGTCGGCGCGAACACCAGAGAATAT
LOC_Os06g11740
Os.23073.1.S1_at--228--10411Chr06:6223187..6223211 (25 bp)
TTTTGTGATCCTTCGACTGCTCTAT
LOC_Os06g11740
Os.23073.1.S1_at--818--5711Chr06:6223201..6223225 (25 bp)
GACTGCTCTATCTTTTTTATCCGAA
LOC_Os06g11740
Os.23073.1.S1_at--984--10331Chr06:6223216..6223240 (25 bp)
TTTATCCGAAGATCACTGCCTTTGT
LOC_Os06g11740
Os.23073.1.S1_at--469--2931Chr06:6223346..6223370 (25 bp)
AAGGCATGCTACTGCTTGGGCTTCC
LOC_Os06g11740
Os.23073.1.S1_at--96--8651Chr06:6223362..6223386 (25 bp)
TGGGCTTCCAAATCGTTAGCATCTG
LOC_Os06g11740
Os.23073.1.S1_at--189--9451Chr06:6223393..6223417 (25 bp)
TCGGAGAGCCAAGCACCAGTTGATT
LOC_Os06g11740
Os.23073.1.S1_at--107--7811Chr06:6223504..6223528 (25 bp)
GGTCGGCTGCGCAAATTACTGTAAC
LOC_Os06g11740
Os.23073.1.S1_at--903--10291Chr06:6223560..6223584 (25 bp)
TTTCCTTACATCTTCTCATAGCTAC
LOC_Os06g11740
Os.23073.1.S1_at--1116--9931Chr06:6223597..6223621 (25 bp)
TACCGTCCATTTCGTTTTCTTGGAG
LOC_Os06g11740
Target Sequence 
AAAAGTGCCTATTCTGGTCGGCGCGAACACCAGAGAATATACTTCAACCAGATACTTATTTAACATTAGCAGCTTCTTTT
GTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTGTGAAGCGGACATGGAGTAGGCGTACTCTCTT
CACCTGCCTTGAGCAAGGAAAACATAAATTTAACAGGGTATACCCGTCTAAGCAAGGGAATTTGCATGATGGAGCAAGGC
ATGCTACTGCTTGGGCTTCCAAATCGTTAGCATCTGTTTCAATCGGAGAGCCAAGCACCAGTTGATTGAACAACAATACA
TGAAGAACACGATTTGTCAACTGGGACATGTAGTAGATTGGAGTAATCAGTAACTGAACAGACCATTTGCTGTGGTCGGC
TGCGCAAATTACTGTAACTGCTTCGTTATGAAGCACACCTTTTTTCCCCTTTCCTTACATCTTCTCATAGCTACTCTTAT
AATAGTTACCGTCCATTTCGTTTTCTTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis