Browse Element(s) Details


OsAffx.4802.1.S1_at

Description tigr:9634.m01151
TID=OsAffx.4802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1177011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11730Os.12968.1.S1_at11/116+6207297..6213435RNA recognition motif family protein, expressed
LOC_Os06g11740Os.23073.1.S1_at11/116+6221593..6223682adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os06g11750OsAffx.15375.1.S1_at9/116+6226814..6228558hypothetical protein
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein
LOC_Os06g11780OsAffx.28215.1.S1_at10/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11780Os.57514.1.S1_x_at1/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11790Os.18671.1.S1_at11/116+6242662..6246718TLD family protein, expressed
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4802.1.S1_at--372--10051Chr06:6236743..6236767 (25 bp)
TAGTATGGAGCAACACTCAGAAGTC
LOC_Os06g11770
OsAffx.4802.1.S1_at--902--5311Chr06:6236762..6236786 (25 bp)
GAAGTCAGAGTCACCTGTTCTTACT
LOC_Os06g11770
OsAffx.4802.1.S1_at--441--9651Chr06:6236766..6236790 (25 bp)
TCAGAGTCACCTGTTCTTACTTGGG
LOC_Os06g11770
OsAffx.4802.1.S1_at--168--7611Chr06:6236789..6236813 (25 bp)
GGGCAAGTTCCTACATACCTGGACT
LOC_Os06g11770
OsAffx.4802.1.S1_at--239--2091Chr06:6236801..6236825 (25 bp)
ACATACCTGGACTAGGCTTGTCCGT
LOC_Os06g11770
OsAffx.4802.1.S1_at--668--911Chr06:6236814..6236838 (25 bp)
AGGCTTGTCCGTGAGATCCGACGAA
LOC_Os06g11770
OsAffx.4802.1.S1_at--835--6031Chr06:6236826..6236850 (25 bp)
GAGATCCGACGAAACACATTAGATG
LOC_Os06g11770
OsAffx.4802.1.S1_at--472--4111Chr06:6236835..6236992 (25 bp)
CGAAACACATTAGATGACATCAGCA
LOC_Os06g11770
OsAffx.4802.1.S1_at--426--5671Chr06:6236983..6237007 (25 bp)
GACATCAGCAAAGATCTTGGGCGAT
LOC_Os06g11770
OsAffx.4802.1.S1_at--432--6431Chr06:6236995..6237019 (25 bp)
GATCTTGGGCGATTTGGATTGGAAA
LOC_Os06g11770
OsAffx.4802.1.S1_at--848--7911Chr06:6237010..6237034 (25 bp)
GGATTGGAAATGGAACCTACAGGAA
LOC_Os06g11770
Target Sequence 
TAGTATGGAGCAACACTCAGAAGTCAGAGTCACCTGTTCTTACTTGGGGCAAGTTCCTACATACCTGGACTAGGCTTGTC
CGTGAGATCCGACGAAACACATTAGATGACATCAGCAAAGATCTTGGGCGATTTGGATTGGAAATGGAACCTACAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis