Browse Element(s) Details


Os.12968.1.S1_at

Description gb:AK058664.1
DB_XREF= gi:32968682
TID=Os.12968.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-018-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G07, full insert sequence.
FL= gb:AK058664.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1173011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11670OsAffx.4801.1.S1_at11/116+6188102..6188359hypothetical protein
LOC_Os06g11680OsAffx.27569.1.S1_at11/116+6190532..6191497Phosphate-induced protein 1 conserved region containing protein
LOC_Os06g11690OsAffx.27570.1.S1_at11/116+6196207..6196577hypothetical protein
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11710OsAffx.27571.1.S1_at11/116+6201141..6201791Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g11720Os.51664.1.S1_at11/116+6204614..6206558UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11730Os.12968.1.S1_at11/116+6207297..6213435RNA recognition motif family protein, expressed
LOC_Os06g11740Os.23073.1.S1_at11/116+6221593..6223682adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os06g11750OsAffx.15375.1.S1_at9/116+6226814..6228558hypothetical protein
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12968.1.S1_at--368--9151Chr06:6208690..6208714 (25 bp)
TGCGCAGATCCAAGGCTCTTTTGTA
LOC_Os06g11730
Os.12968.1.S1_at--95--10671Chr06:6208652..6208676 (25 bp)
TTCCTCACAACTTCAGGCTTCAGCT
LOC_Os06g11730
Os.12968.1.S1_at--608--3011Chr06:6208620..6208644 (25 bp)
AATGCAATGTCAATACTGCCTCCCA
LOC_Os06g11730
Os.12968.1.S1_at--805--2611Chr06:6207721..6207741 (21 bp)
AACCGCTTTGCAACCAGCTGATCTG
LOC_Os06g11730
Os.12968.1.S1_at--640--2411Chr06:6207661..6207685 (25 bp)
AAACAATACTCCGACAGGTGCCTGA
LOC_Os06g11730
Os.12968.1.S1_at--763--5651Chr06:6207649..6207673 (25 bp)
GACAGGTGCCTGAAAGCCATCTGAA
LOC_Os06g11730
Os.12968.1.S1_at--878--7251Chr06:6207489..6207513 (25 bp)
GTGCGGACAAAGTTATTGGCCGTCT
LOC_Os06g11730
Os.12968.1.S1_at--1131--6771Chr06:6207478..6207502 (25 bp)
GTTATTGGCCGTCTGTAACAGTCTC
LOC_Os06g11730
Os.12968.1.S1_at--1038--10472Chr07:6243297..6243316 (20 bp)
TTAAACCCATTTTCATTCTTTCATT
NONE
Os.12968.1.S1_at--282--10711Chr06:6207348..6207372 (25 bp)
TTGCGACGTGGCTGTCCAATGTACA
LOC_Os06g11730
Os.12968.1.S1_at--710--8571Chr06:6207308..6207332 (25 bp)
TGGATTTCATACCAGCAGCTCAGAG
LOC_Os06g11730
Target Sequence 
TGCGCAGATCCAAGGCTCTTTTGTACCCCTGCCTTCGCTTCCTCACAACTTCAGGCTTCAGCTCCCCCCTAATGCAATGT
CAATACTGCCTCCCACCCCAACCGCTTTGCAACCAGCTGATCTGCAGGCTGCCCCTGCAGCAACTGGAGCAACAAACCCA
AACAATACTCCGACAGGTGCCTGAAAGCCATCTGAAGATAAAAAAGATTTATTCAGGTTCAAAAGAATCAAAACAACAAC
NCCCTTCAAGCTGACTGCTANCTGGGGCNGANAAAGTCAGAAAGAAANGCGCGNNAAAAAGCGATCCCAGTTTTCCATNT
CGATCGATNTGGTGCGGACAAAGTTATTGGCCGTCTGTAACAGTCTCTNTGGATGATGTTGACCAACATACTCAAAAATA
ACTTTAAACCCATTTTCATTCTTTCATTTTTTTTTTGTTCTTCTTTTACCGTTTCAATAGCTTTTTTTTTTTTTGCGACG
TGGCTGTCCAATGTACAGGCCATTNTGGATTNTGGATTTCATACCAGCAGCTCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis