Browse Element(s) Details


OsAffx.27570.1.S1_at

Description tigr:9634.m01143
TID=OsAffx.27570.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1169011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11640Os.49227.1.S1_at11/116+6170590..6175330Phosphotyrosyl phosphate activator protein, expressed
LOC_Os06g11650Os.50807.1.S1_at9/116+6176897..6178164Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11660Os.37006.1.S1_at6/116+6179336..6180477Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11670OsAffx.4801.1.S1_at11/116+6188102..6188359hypothetical protein
LOC_Os06g11680OsAffx.27569.1.S1_at11/116+6190532..6191497Phosphate-induced protein 1 conserved region containing protein
LOC_Os06g11690OsAffx.27570.1.S1_at11/116+6196207..6196577hypothetical protein
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11710OsAffx.27571.1.S1_at11/116+6201141..6201791Cytokinin-O-glucosyltransferase 2, putative
LOC_Os06g11720Os.51664.1.S1_at11/116+6204614..6206558UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g11730Os.12968.1.S1_at11/116+6207297..6213435RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27570.1.S1_at--594--10152Chr06:6196239..6196263 (25 bp)
TATCGTAATCGATGTATTCGACGAG
LOC_Os06g11690
OsAffx.27570.1.S1_at--610--5671Chr06:6196274..6196298 (25 bp)
GACTTGGCTCCACGTACTCCGGATT
LOC_Os06g11690
OsAffx.27570.1.S1_at--476--4691Chr06:6196280..6196304 (25 bp)
GCTCCACGTACTCCGGATTCGTAAA
LOC_Os06g11690
OsAffx.27570.1.S1_at--2--7011Chr06:6196287..6196311 (25 bp)
GTACTCCGGATTCGTAAACTACAGT
LOC_Os06g11690
OsAffx.27570.1.S1_at--220--9292Chr06:6196291..6196315 (25 bp)
TCCGGATTCGTAAACTACAGTGGGT
LOC_Os06g11690
OsAffx.27570.1.S1_at--370--2391Chr06:6196302..6196326 (25 bp)
AAACTACAGTGGGTATATTGGCGAT
LOC_Os06g11690
OsAffx.27570.1.S1_at--369--9871Chr06:6196306..6196330 (25 bp)
TACAGTGGGTATATTGGCGATGAGA
LOC_Os06g11690
OsAffx.27570.1.S1_at--335--6351Chr06:6196334..6196358 (25 bp)
GATGCCTTGCACTCTTCCCTGAGGG
LOC_Os06g11690
OsAffx.27570.1.S1_at--103--9031Chr06:6196341..6196365 (25 bp)
TGCACTCTTCCCTGAGGGTCCCTTT
LOC_Os06g11690
OsAffx.27570.1.S1_at--763--10531Chr06:6196524..6196543 (20 bp)
TTCATGAACAACTCGTGTATATGGA
LOC_Os06g11690
OsAffx.27570.1.S1_at--1033--8951Chr06:6196524..6196547 (24 bp)
TGAACAACTCGTGTATATGGAGGTA
LOC_Os06g11690
Target Sequence 
TATCGTAATCGATGTATTCGACGAGATCTCCCGGCGACTTGGCTCCACGTACTCCGGATTCGTAAACTACAGTGGGTATA
TTGGCGATGAGATTCGATGCCTTGCACTCTTCCCTGAGGGTCCCTTTTATACCGTGGATCATCTTGATCTTCATGAACAA
CTCGTGTATATGGAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis