Browse Element(s) Details


Os.50807.1.S1_at

Description gb:AK058704.1
DB_XREF= gi:32968722
TID=Os.50807.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C08, full insert sequence.
FL= gb:AK058704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g116509/11Phosphate-induced protein 1 conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11610Os.12234.2.S1_s_at11/116+6151031..6152439Hsp20/alpha crystallin family protein, expressed
LOC_Os06g11620Os.12166.1.S1_at11/116+6154941..6158887Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630Os.22584.1.S1_at10/116+6159331..6162652F-box family protein, putative, expressed
LOC_Os06g11640Os.49227.1.S1_at11/116+6170590..6175330Phosphotyrosyl phosphate activator protein, expressed
LOC_Os06g11650Os.50807.1.S1_at9/116+6176897..6178164Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11660Os.37006.1.S1_at6/116+6179336..6180477Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11670OsAffx.4801.1.S1_at11/116+6188102..6188359hypothetical protein
LOC_Os06g11680OsAffx.27569.1.S1_at11/116+6190532..6191497Phosphate-induced protein 1 conserved region containing protein
LOC_Os06g11690OsAffx.27570.1.S1_at11/116+6196207..6196577hypothetical protein
LOC_Os06g11700OsAffx.15374.1.S1_s_at11/116+6198475..6199739Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11710OsAffx.27571.1.S1_at11/116+6201141..6201791Cytokinin-O-glucosyltransferase 2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50807.1.S1_at--255--7531Chr06:6177401..6177425 (25 bp)
GTGGACGGCATGGTCATCAGCCTCG
LOC_Os06g11650
Os.50807.1.S1_at--970--8751Chr06:6177164..6177188 (25 bp)
TTGTGGGACCCCACGACGTCGCAGT
LOC_Os06g11650
Os.50807.1.S1_at--307--2171Chr06:6177134..6177158 (25 bp)
ACACTTGTCTAGACATGGCGGGAGC
LOC_Os06g11650
Os.50807.1.S1_at--1064--7071Chr06:6177083..6177107 (25 bp)
GTCAATTGAATGGTCTAGCTCACTA
LOC_Os06g11650
Os.50807.1.S1_at--1108--8311Chr06:6177013..6177037 (25 bp)
GGCTCATTTATTTTCATTCATCGTG
LOC_Os06g11650
Os.50807.1.S1_at--535--3551Chr06:6176995..6177019 (25 bp)
CATCGTGTTCACTTGTTGCATATAT
LOC_Os06g11650
Os.50807.1.S1_at--556--6671Chr09:14981593..14982079 (25 bp)
GTTGCATATATATCCTTGCGTGTGC
NONE
Os.50807.1.S1_at--1039--251NONE
ATATCCTTGCGTGTGCATCCTGTAA
NONE
Os.50807.1.S1_at--886--9051Chr06:6176959..6176983 (25 bp)
TGCATCCTGTAATTTGCTCCCTGAT
LOC_Os06g11650
Os.50807.1.S1_at--425--211Chr06:6176948..6176972 (25 bp)
ATTTGCTCCCTGATCATGAGAAGGA
LOC_Os06g11650
Os.50807.1.S1_at--744--5471Chr06:6176905..6176929 (25 bp)
GAACTTATGATCGATGCATTGTAGG
LOC_Os06g11650
Target Sequence 
GTGGACGGCATGGTCATCAGCCTCGCCGCGCTCCTCGCCGGCACGGTGACGAACCCCTTCGGCGACGGGTACTACCAGGG
CGACGCCGGCGCCGGGATGGAGGCCGCCACGGCGTGCGCCGGCGTCTTCGGCAGCGGCGCCTTCCCCGGCTACCCCGGCA
AGCTGCTCAAGGACCCGGTCACCGGCGCCAGCTACAACGCCGTCGGGCTCGCCGGCCGGAAGTACCTGCTGCCGGCGTTG
TGGGACCCCACGACGTCGCAGTGCAAGACACTTGTCTAGACATGGCGGGAGCGGCGCTCGCGGGAAGAAGAAGGCGAAGT
CAATTGAATGGTCTAGCTCACTAGCTAGCTGCATGAGATCGAGGAGAACAAAAAAATGGAAAATAAATGGCTCATTTATT
TTCATTCATCGTGTTCACTTGTTGCATATATATCCTTGCGTGTGCATCCTGTAATTTGCTCCCTGATCATGAGAAGGAGA
GCTTGTATTGAGTTATGAACTTATGATCGATGCATTGTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis