Browse Element(s) Details


Os.12234.2.S1_s_at

Description gb:AK064012.1
DB_XREF= gi:32974030
TID=Os.12234.2
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) beta-expansin EXPB4 (OSJNBa0010C11.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H01, full insert sequence.
FL= gb:AK064012.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1161011/11Hsp20/alpha crystallin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11560NANA6+6126033..6128402retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11570Os.14919.1.S1_at7/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570Os.56216.1.S1_at2/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570OsAffx.29313.1.S1_at1/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11580OsAffx.27568.1.S1_at11/116+6140611..6141770hypothetical protein
LOC_Os06g11590OsAffx.4800.1.S1_at11/116+6143587..6144405expressed protein
LOC_Os06g11590Os.4714.2.S1_x_at1/116+6143587..6144405expressed protein
LOC_Os06g11590Os.4714.2.S1_at1/116+6143587..6144405expressed protein
LOC_Os06g11600OsAffx.15372.1.S1_x_at11/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11600Os.47251.1.S1_at8/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11610Os.12234.2.S1_s_at11/116+6151031..6152439Hsp20/alpha crystallin family protein, expressed
LOC_Os06g11620Os.12166.1.S1_at11/116+6154941..6158887Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630Os.22584.1.S1_at10/116+6159331..6162652F-box family protein, putative, expressed
LOC_Os06g11640Os.49227.1.S1_at11/116+6170590..6175330Phosphotyrosyl phosphate activator protein, expressed
LOC_Os06g11650Os.50807.1.S1_at9/116+6176897..6178164Phosphate-induced protein 1 conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12234.2.S1_s_at--422--7631Chr06:6151324..6151348 (25 bp)
TGTCGAGTAGGAGGTCCGACCAAGT
LOC_Os06g11610
Os.12234.2.S1_s_at--766--7231Chr06:6151311..6151335 (25 bp)
GTCCGACCAAGTAAGCTCTAGTGCT
LOC_Os06g11610
Os.12234.2.S1_s_at--702--1631Chr06:6151279..6151303 (25 bp)
AGCGAGGCTATCTAGAGTAGGAGTA
LOC_Os06g11610
Os.12234.2.S1_s_at--609--2831Chr06:6151255..6151279 (25 bp)
AAGTTTGAGACTAGATCGAGAGCGA
LOC_Os06g11610
Os.12234.2.S1_s_at--713--6391Chr06:6151242..6151266 (25 bp)
GATCGAGAGCGAGGCTATCTAGAGT
LOC_Os06g11610
Os.12234.2.S1_s_at--624--6851Chr06:6151209..6151233 (25 bp)
GTTTGAGACTAGATCGAGAGGCCTT
LOC_Os06g11610
Os.12234.2.S1_s_at--632--1391Chr06:6151204..6151228 (25 bp)
AGACTAGATCGAGAGGCCTTTTTGT
LOC_Os06g11610
Os.12234.2.S1_s_at--754--8791Chr06:6151161..6151185 (25 bp)
TGTTCTGATCCCTGCTTGCGTTTTG
LOC_Os06g11610
Os.12234.2.S1_s_at--921--7731Chr06:6151083..6151107 (25 bp)
GGTGAAAACAGTAACAACAGTGCAA
LOC_Os06g11610
Os.12234.2.S1_s_at--716--5131Chr06:6151062..6151086 (25 bp)
GCAAATCTTTGCTGATGATGGTAAA
LOC_Os06g11610
Os.12234.2.S1_s_at--819--2311Chr06:6151034..6151058 (25 bp)
AAAGTACTAGTGCTCCGAGTTACTG
LOC_Os06g11610
Target Sequence 
TGTCGAGTAGGAGGTCCGACCAAGTAAGCTCTAGTGCTAATNGAGAGCGAGGCTATCTAGAGTAGGAGTAAGTTTGAGAC
TAGATCGAGAGCGAGGCTATCTAGAGTAGGAATAAGTTTGAGACTAGATCGAGAGGCCTTTTTGTGATGGTGTCCGCNAC
TCGTGTTCTGATCCCTGCTTGCGTTTTGTTCATCCTGTGGGGGTTTCTGATGTTTTGTTCATCNTGTGGAGTTTCTGATG
GTGGTGAAAACAGTAACAACAGTGCAAATCTTTGCTGATGATGGTAAAAAAAAAGTACTAGTGCTCCGAGTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12234.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis