Browse Element(s) Details


Os.4714.2.S1_x_at

Description gb:NM_186164.1
DB_XREF= gi:34899413
GEN=P0585H11.29
TID=Os.4714.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4714 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative 60S ribosomal protein (P0585H11.29), mRNA.
PROD=putative 60S ribosomal protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0187010/1160S ribosomal protein L13a-2, putative, expressed
LOC_Os06g115901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4714.2.S1_x_at--552--5351Chr07:523788..523812 (25 bp)
GAAGATGAAGTACCTCCGGTTCCTC
LOC_Os07g01870
Os.4714.2.S1_x_at--877--5152Chr07:523762..523786 (25 bp)
GCAAGCGGATGAACACCAAGCCCTC
LOC_Os07g01870
Os.4714.2.S1_x_at--17--1591Chr07:523443..523467 (25 bp)
AGCTCTCCAAGGAGGTCGGCTGGAA
LOC_Os07g01870
Os.4714.2.S1_x_at--431--971Chr07:523434..523458 (25 bp)
AGGAGGTCGGCTGGAACTACCACGA
LOC_Os07g01870
Os.4714.2.S1_x_at--708--2531Chr07:523422..523444 (23 bp)
AACTACCACGACACCATCAGGGTTG
LOC_Os07g01870
Os.4714.2.S1_x_at--268--2171Chr07:523326..523434 (25 bp)
ACACCATCAGGGTTGAATGGGACGC
LOC_Os07g01870
Os.4714.2.S1_x_at--447--5299Chr06:6143971..6143993 (23 bp)
GAATGGGACGCAGATTCAGTGACAT
LOC_Os06g11590
Os.4714.2.S1_x_at--142--8111Chr07:523245..523269 (25 bp)
GGACCCACATGTGTTTGGACCCACA
LOC_Os07g01870
Os.4714.2.S1_x_at--469--6871NONE
GTTTGGACCCACATGAATTGGAGGA
NONE
Os.4714.2.S1_x_at--1065--2931Chr07:522314..522338 (25 bp)
AAGGCTAAGGTTGCATACGAGAGGA
LOC_Os07g01870
Os.4714.2.S1_x_at--1131--2211Chr07:522278..522302 (25 bp)
ACAAGGCTTCGTGTCAAGGCTGAGA
LOC_Os07g01870
Target Sequence 
GAAGATGAAGTACCTCCGGTTCCTCCGCAAGCGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCGCCCCCT
CCCGCATCTTCTGGCGCACCGTCCGCGGCATGATCCCCCACAAGACCCCCCGCGGCGAGGCCGCCCTCGCCAACCTCAAG
GCCTTCGACGGCGTCCCCCCTCCCTACGACCGCACCAAGCGCATGGTCGTCCCCGACGCCCTCAAGGTTCTTCGCCTCCA
GCCCGGCCACAAGTACTGCCTCCTCGGCCAGCTCTCCAAGGAGGTCGGCTGGAACTACCACGACACCATCAGGGTTGAAT
GGGACGCAGATTCAGTGACATTCCCCCGTGACATTCTCGGTGACATTGAGTCACTGATATGTGGGACCCACATGTGTTTG
GACCCACATGAATTGGAGGAGAAGAGAAAGGAGAAGGCTAAGGTTGCATACGAGAGGAGGAAGCAATTAACAAGGCTTCG
TGTCAAGGCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4714.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis