Browse Element(s) Details


Os.38052.1.S1_at

Description gb:AK070584.1
DB_XREF= gi:32980608
TID=Os.38052.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38052 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, At1g74160 (P0585H11.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023062J01, full insert sequence.
FL= gb:AK070584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0186011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01830OsAffx.16036.1.S1_x_at9/117+489913..490657hypothetical protein
LOC_Os07g01840Os.20517.1.S1_at11/117+494780..497280expressed protein
LOC_Os07g01850Os.21876.1.S1_at11/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01850OsAffx.5177.1.S1_at8/117+504590..509557NLI interacting factor-like phosphatase family protein, expressed
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38052.1.S1_at--284--871Chr07:519958..519982 (25 bp)
AGGCGCAGAAGGAGGCTCTTCGCTT
LOC_Os07g01860
Os.38052.1.S1_at--1034--911Chr07:519970..519994 (25 bp)
AGGCTCTTCGCTTGACAGTCACTAG
LOC_Os07g01860
Os.38052.1.S1_at--187--3331Chr07:519989..520013 (25 bp)
CACTAGTGATGGCTGCTGACTTGCA
LOC_Os07g01860
Os.38052.1.S1_at--603--851Chr07:519997..520021 (25 bp)
ATGGCTGCTGACTTGCATTGGAGTG
LOC_Os07g01860
Os.38052.1.S1_at--29--2691Chr07:520024..520048 (25 bp)
AAGCGTGAAGCGAGTGTAACTGTGA
LOC_Os07g01860
Os.38052.1.S1_at--1010--7431Chr07:520037..520061 (25 bp)
GTGTAACTGTGATACTGTACCTAGT
LOC_Os07g01860
Os.38052.1.S1_at--689--8751Chr07:520052..520076 (25 bp)
TGTACCTAGTAGTAGCATGTCCATT
LOC_Os07g01860
Os.38052.1.S1_at--158--4331Chr07:520072..520096 (25 bp)
CCATTGTTGAGGTTTGATTTGTCCA
LOC_Os07g01860
Os.38052.1.S1_at--395--1771Chr07:520137..520161 (25 bp)
ACCTGAAGTAGGAATGCAATGTTTG
LOC_Os07g01860
Os.38052.1.S1_at--831--6191Chr07:520161..520185 (25 bp)
GAGGCACTTGCCTAGTTGTTGTTCT
LOC_Os07g01860
Os.38052.1.S1_at--495--9191Chr07:520169..520193 (25 bp)
TGCCTAGTTGTTGTTCTGCGATAAA
LOC_Os07g01860
Target Sequence 
AGGCGCAGAAGGAGGCTCTTCGCTTGACAGTCACTAGTGATGGCTGCTGACTTGCATTGGAGTGNGAAGCGTGAAGCGAG
TGTAACTGTGATACTGTACCTAGTAGTAGCATGTCCATTGTTGAGGTTTGATTTGTCCAGAGAGAGAGAGAGAGAGAGAG
NNGAGGAAGAGCAATGCAGAAACCTGAAGTAGGAATGCAATGTTTGAGGCACTTGCCTAGTTGTTGTTCTGCGATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38052.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis