Browse Element(s) Details


Os.44557.1.S1_at

Description gb:CA764959
DB_XREF= gi:27546878
DB_XREF=AF53-Rpf_05_J18_T7_069.ab1
CLONE=C0001770
TID=Os.44557.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0585H11.32), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0190011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01860Os.38052.1.S1_at11/117+514165..520238expressed protein
LOC_Os07g01870Os.4714.1.S1_at11/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_x_at10/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01870Os.4714.2.S1_at7/117+521662..52406460S ribosomal protein L13a-2, putative, expressed
LOC_Os07g01880Os.36267.1.S2_s_at11/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.36267.1.S1_s_at10/117+524570..532642Leo1, expressed
LOC_Os07g01880Os.11217.1.S1_at1/117+524570..532642Leo1, expressed
LOC_Os07g01890Os.23660.1.S1_at11/117+533901..536093expressed protein
LOC_Os07g01890Os.23660.1.S2_at11/117+533901..536093expressed protein
LOC_Os07g01900Os.44557.1.S1_at11/117+536280..538081expressed protein
LOC_Os07g01910Os.5376.1.S1_at11/117+554328..556672expressed protein
LOC_Os07g01920Os.14676.1.S1_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920Os.14676.1.S1_a_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01930Os.4673.1.S1_a_at10/117+561642..564353Ferredoxin, 2Fe-2S, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44557.1.S1_at--759--211Chr07:536328..536352 (25 bp)
ATTTGATTCGTGATGTCGCTCTGCC
LOC_Os07g01900
Os.44557.1.S1_at--347--9491Chr07:536347..536371 (25 bp)
TCTGCCGCGCTGTGGTGATGCAGTC
LOC_Os07g01900
Os.44557.1.S1_at--345--4271Chr07:536416..536440 (25 bp)
CCGGCGCCACGGATCAAGAGCAGGT
LOC_Os07g01900
Os.44557.1.S1_at--709--5931Chr07:537603..537624 (22 bp)
GAGCAGGTCAGAAGGACCAACATCG
LOC_Os07g01900
Os.44557.1.S1_at--675--5351Chr07:537705..537729 (25 bp)
GAAGATAGAAATGTGCTCAGCCGGT
LOC_Os07g01900
Os.44557.1.S1_at--74--5591Chr07:537712..537832 (25 bp)
GAAATGTGCTCAGCCGGTTGTTGAC
LOC_Os07g01900
Os.44557.1.S1_at--1044--1671Chr07:537823..537843 (21 bp)
AGCCGGTTGTTGACTTTCTGCGGGA
LOC_Os07g01900
Os.44557.1.S1_at--462--4031Chr07:537887..537911 (25 bp)
CGTAGTTGCGGTGTTTGTTGCATCC
LOC_Os07g01900
Os.44557.1.S1_at--441--611Chr07:537946..537970 (25 bp)
ATGCGCGGCGTAAGCGTGCAAAGTT
LOC_Os07g01900
Os.44557.1.S1_at--775--5131Chr07:537963..537987 (25 bp)
GCAAAGTTTGGTACTAATGCTTGAA
LOC_Os07g01900
Os.44557.1.S1_at--1047--8013Chr11:15915106..15915531 (25 bp)
GGAGGGCCTGTGTAACACCCTGAAA
NONE
Target Sequence 
ATTTGATTCGTGATGTCGCTCTGCCGCGCTGTGGTGATGCAGTCGCGGGGGCTTCTTCTCCGCACCCGCCGTCGGACCTT
CTCCACCACCGGCGCCACGGATCAAGAGCAGGTCAGAAGGACCAACATCGTCAGAGAAATTGATGAATTGAAGGCGAAGG
TGAAGAGGGAAATGATTGAAGATGTCGAGAAGGTAAAAAGGGTGGAGAATGAAGATAGAAATGTGCTCAGCCGGTTGTTG
ACTTTCTGCGGGATGCCCAGGGGTGTATTTCGAGATAATCTAGTGTTTGGATGTAACGTAGTTGCGGTGTTTGTTGCATC
CGGTGTAGTTGGGGCATGCAGTGCTGGCTGGAGAGATGCGCGGCGTAAGCGTGCAAAGTTTGGTACTAATGCTTGAAGTT
TAATTAGCTGTAATGTTAGATGGAGGAGGGCCTGTGTAACACCCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis