Browse Element(s) Details


Os.36267.1.S1_s_at

Description gb:AK063942.1
DB_XREF= gi:32973960
TID=Os.36267.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU070849(R10361),D23619(C3104)~similar to Arabidopsis thaliana chromosome 5, MAF19.15~unknown protein (P0585H11.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E05, full insert sequence.
FL= gb:AK063942.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3897010/11Leo1, expressed
LOC_Os07g0188010/11Leo1, expressed
LOC_Os03g549301/11Leo1
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38920Os.26843.1.S1_at11/1112+23897862..23902154Heparanase-like protein 2 precursor, putative, expressed
LOC_Os12g38930Os.8792.1.S1_at11/1112+23902336..23907840Glycosyl transferase family 8 protein, expressed
LOC_Os12g38940Os.53057.1.S1_at11/1112+23910570..23913206Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38950Os.56278.1.S1_at11/1112+23914654..23918334Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38960Os.32996.1.S1_at11/1112+23918703..23922532Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38970Os.11217.1.S1_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S2_s_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S1_s_at10/1112+23926998..23934518Leo1, expressed
LOC_Os12g38980OsAffx.20017.1.S1_at11/1112+23937166..23938105hypothetical protein
LOC_Os12g38990OsAffx.32089.1.S1_at11/1112+23947305..23948240BED zinc finger family protein
LOC_Os12g39000OsAffx.7834.2.A1_at11/1112+23951674..23952108hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0010048biological_processvernalization response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36267.1.S1_s_at--500--5432Chr12:23929115..23929139 (25 bp)
GAACCTGGTGGTTCCACTTAAGCAG
LOC_Os12g38970
Os.36267.1.S1_s_at--509--2912Chr12:23929739..23929763 (25 bp)
AAGGATACGACTGGAGGACAATATT
LOC_Os12g38970
Os.36267.1.S1_s_at--76--8152Chr12:23929754..23929778 (25 bp)
GGACAATATTGTGCGGTGGAGAACC
LOC_Os12g38970
Os.36267.1.S1_s_at--65--2972Chr12:23929791..23930181 (25 bp)
AATGGCACTACATCTTGTGAAAGTA
LOC_Os12g38970
Os.36267.1.S1_s_at--919--9572Chr12:23930172..23930193 (22 bp)
TCTTGTGAAAGTAATGCGCGCATTG
LOC_Os12g38970
Os.36267.1.S1_s_at--763--6432Chr12:23930271..23930295 (25 bp)
GATCAGTCCCATCTGTTTCTGAGGA
LOC_Os12g38970
Os.36267.1.S1_s_at--434--5311NONE
GAAGGGAGTCCTTCAATCACAAGGA
NONE
Os.36267.1.S1_s_at--18--2452Chr12:23930447..23930471 (25 bp)
AAAATGAGATTCATGCCATCTTCCT
LOC_Os12g38970
Os.36267.1.S1_s_at--986--9572Chr12:23930465..23930489 (25 bp)
TCTTCCTTGTCTTCGAAATCACATC
LOC_Os12g38970
Os.36267.1.S1_s_at--704--9693Chr12:23930483..23930507 (25 bp)
TCACATCGTTTATTAACTGCTCTTG
LOC_Os12g38970
Os.36267.1.S1_s_at--804--2553Chr12:23930497..23930521 (25 bp)
AACTGCTCTTGTTGATTCTCAGAAT
LOC_Os12g38970
Target Sequence 
GAACCTGGTGGTTCCACTTAAGCAGCCGCCAGCTCAACCNGACAGAATGAATGTGATCAAGGTATCAAACATTATGGGGA
TTGACCCGAAGCCTTTTGATCCTAAAACATATGTGGAGGAGGATGTATTTGTTACAGATGAATCTGGGACTAAAAAAAGG
ATACGACTGGAGGACAATATTGTGCGGTGGAGAACCGNTAAGAATGCTAATGGCACTACATCTTGTGAAAGTAATGCGCG
CATTGTAAAATGGAAAGATGGAACGATGCAGCTGCTGATTGGTAATGAAGTTCTTGATATATCTGTACATGAAGCACATC
ATGATCAGTCCCATCTGTTTCTGAGGAATGGGAAGGGAGTCCTTCAATCACAAGGANGGCTCTTACGGAAAATGAGATTC
ATGCCATCTTCCTTGTCTTCGAAATCACATCGTTTATTAACTGCTCTTGTTGATTCTCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36267.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis