Browse Element(s) Details


Os.26843.1.S1_at

Description gb:AK060767.1
DB_XREF= gi:32970785
TID=Os.26843.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26843 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001J13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A11, full insert sequence.
FL= gb:AK098886.1 gb:AK060767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3892011/11Heparanase-like protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38880Os.11612.1.S1_at10/1112+23878675..23881227pentatricopeptide, putative, expressed
LOC_Os12g38890NANA12+23881418..23883176transposon protein, putative, unclassified
LOC_Os12g38900Os.23421.1.S1_at11/1112+23885360..23889818Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os12g38910Os.53867.1.S1_s_at11/1112+23892149..23895285expressed protein
LOC_Os12g38910Os.53867.1.S1_at11/1112+23892149..23895285expressed protein
LOC_Os12g38920Os.26843.1.S1_at11/1112+23897862..23902154Heparanase-like protein 2 precursor, putative, expressed
LOC_Os12g38930Os.8792.1.S1_at11/1112+23902336..23907840Glycosyl transferase family 8 protein, expressed
LOC_Os12g38940Os.53057.1.S1_at11/1112+23910570..23913206Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38950Os.56278.1.S1_at11/1112+23914654..23918334Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38960Os.32996.1.S1_at11/1112+23918703..23922532Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38970Os.11217.1.S1_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S2_s_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S1_s_at10/1112+23926998..23934518Leo1, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004566molecular_functionbeta-glucuronidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26843.1.S1_at--636--1991Chr12:23901597..23901621 (25 bp)
ACTCCTTTGTCCATGGCCTGAAGAG
LOC_Os12g38920
Os.26843.1.S1_at--244--6091Chr12:23901674..23901698 (25 bp)
GAGTACCATCTGACTCCACAGGATG
LOC_Os12g38920
Os.26843.1.S1_at--731--10391Chr12:23901706..23901730 (25 bp)
TTTTGCCAGGACAGTGCTGCTCAAT
LOC_Os12g38920
Os.26843.1.S1_at--814--9251Chr12:23901736..23901760 (25 bp)
TCCTCTTCAGCTCACTGGAGATGGT
LOC_Os12g38920
Os.26843.1.S1_at--550--8551Chr12:23901751..23901775 (25 bp)
TGGAGATGGTGACATCCCTTCACTG
LOC_Os12g38920
Os.26843.1.S1_at--983--3451Chr12:23901780..23901804 (25 bp)
CAGTGATGGTCTCAGTCAATTCCCC
LOC_Os12g38920
Os.26843.1.S1_at--189--7151Chr12:23901839..23901863 (25 bp)
GTCTTCCCAGATTTCGAGGCTGAAG
LOC_Os12g38920
Os.26843.1.S1_at--294--712Chr12:23901901..23901925 (25 bp)
ATGAGGTTTTTCTTTTCTGATGTGA
LOC_Os12g38920
Os.26843.1.S1_at--30--10091Chr12:23901931..23901955 (25 bp)
TAGGTGTTCTCAGGGTTACATCCAC
LOC_Os12g38920
Os.26843.1.S1_at--913--1231Chr12:23902054..23902078 (25 bp)
AGTTCCATTCCCTTCTATGTTTGGT
LOC_Os12g38920
Os.26843.1.S1_at--162--7411Chr12:23902107..23902131 (25 bp)
GTGATATCATGCTCATGTTCCGCAT
LOC_Os12g38920
Target Sequence 
ACTCCTTTGTCCATGGCCTGAAGAGGACAGTCTCCTGGGTTGGGAGCAAAGCCTCGGATGGGCTGGAGAAGAGGGAGGAG
TACCATCTGACTCCACAGGATGGCAACCCTTTTGCCAGGACAGTGCTGCTCAATGGAGCTCCTCTTCAGCTCACTGGAGA
TGGTGACATCCCTTCACTGCCACCAGTGATGGTCTCAGTCAATTCCCCNATCTATGTCGCCCCGCTGTCGATCGCGTTCG
TNGTCTTCCCAGATTTCGAGGCTGAAGGTTGCGAACGATGATTTCGAGTTTAGATAGAAATATCATGAGGTTTTTCTTTT
CTGATGTGATGATATAGGTGTTCTCAGGGTTACATCCACTGTAAAGATTTTTCTGTGTTTCTAGTTTTTTCCCCAATTGG
GCTATATNNNNNNNNNNNNNNNNNNNATANNNNNNNNNNGAATAACTTGATTCCAGTGTTTACTGATCAGTATGTAGCAA
GCCTGCAGTTCCATTCCCTTCTATGTTTGGTTGGGTCACAATGAAGCACATTTGATGTAGTGATATCATGCTCATGTTCC
GCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis