Browse Element(s) Details


Os.53867.1.S1_s_at

Description gb:AK100503.1
DB_XREF= gi:32985712
TID=Os.53867.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099K02, full insert sequence.
FL= gb:AK100503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3891011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38880Os.11612.1.S1_at10/1112+23878675..23881227pentatricopeptide, putative, expressed
LOC_Os12g38890NANA12+23881418..23883176transposon protein, putative, unclassified
LOC_Os12g38900Os.23421.1.S1_at11/1112+23885360..23889818Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os12g38910Os.53867.1.S1_s_at11/1112+23892149..23895285expressed protein
LOC_Os12g38910Os.53867.1.S1_at11/1112+23892149..23895285expressed protein
LOC_Os12g38920Os.26843.1.S1_at11/1112+23897862..23902154Heparanase-like protein 2 precursor, putative, expressed
LOC_Os12g38930Os.8792.1.S1_at11/1112+23902336..23907840Glycosyl transferase family 8 protein, expressed
LOC_Os12g38940Os.53057.1.S1_at11/1112+23910570..23913206Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38950Os.56278.1.S1_at11/1112+23914654..23918334Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38960Os.32996.1.S1_at11/1112+23918703..23922532Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53867.1.S1_s_at--125--9351Chr12:23894694..23894718 (25 bp)
TCGCAAGCTAACTTTCCGACGAGGA
LOC_Os12g38910
Os.53867.1.S1_s_at--409--3431Chr12:23894734..23894758 (25 bp)
CAGAGCAATTCAGAGTCGAGCAGCA
LOC_Os12g38910
Os.53867.1.S1_s_at--749--9271Chr12:23894771..23894795 (25 bp)
TCCGGTTCAGGCCTGCAAAGACTGT
LOC_Os12g38910
Os.53867.1.S1_s_at--335--2791Chr12:23894839..23894863 (25 bp)
AAGAGTGACAGTGCAGCCTCTTCCG
LOC_Os12g38910
Os.53867.1.S1_s_at--206--1691Chr12:23894853..23894877 (25 bp)
AGCCTCTTCCGGGTCAAAAGATTCA
LOC_Os12g38910
Os.53867.1.S1_s_at--973--2431Chr12:23894868..23894892 (25 bp)
AAAAGATTCAGGCTCTTCGAAACCT
LOC_Os12g38910
Os.53867.1.S1_s_at--924--8991Chr12:23894892..23894916 (25 bp)
TGAAGTTGTCATCCTGAGGCATCAG
LOC_Os12g38910
Os.53867.1.S1_s_at--365--2772Chr12:23895000..23895024 (25 bp)
AAGAGCAAGGTGAAGGCCCTCGTCG
LOC_Os12g38910
Os.53867.1.S1_s_at--318--7191Chr12:23895021..23895045 (25 bp)
GTCGGCGCCTTCGAGACAGTGATCT
LOC_Os12g38910
Os.53867.1.S1_s_at--270--10291Chr12:23895107..23895131 (25 bp)
TTTCGTTTTGGAGCTTGTGAACTTC
LOC_Os12g38910
Os.53867.1.S1_s_at--151--5931Chr12:23895117..23895141 (25 bp)
GAGCTTGTGAACTTCCTGTAAATTT
LOC_Os12g38910
Target Sequence 
TCGCAAGCTAACTTTCCGACGAGGAAAGGTACTGAACCTACAGAGCAATTCAGAGTCGAGCAGCACGCCGAGACGGCTCC
GGTTCAGGCCTGCAAAGACTGTAGAAGACAGCAACAGGAGCAAAGAATCCACCAGAGGGAGAAGGAAGAGTGACAGTGCA
GCCTCTTCCGGGTCAAAAGATTCAGGCTCTTCGAAACCTGAAGTTGTCATCCTGAGGCATCAGGATGTCAGGGACAAGAA
GAAGAACGAGCAGGGATTGTTGAACAATGTGATCGAGGAGACAGCGAGCAAGCTTGTGAGACGAGGAAGAGCAAGGTGAA
GGCCCTCGTCGGCGCCTTCGAGACAGTGATCTCGCTTCAAGAAAGTAAGGTGGCTCCAGTTACAGCTGCAGCTCTGAGCT
GAATGATGTGTGTTTTCGTTTTGGAGCTTGTGAACTTCCTGTAAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53867.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis