Browse Element(s) Details


Os.8792.1.S1_at

Description gb:AK065485.1
DB_XREF= gi:32975503
TID=Os.8792.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013003G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013003G01, full insert sequence.
FL= gb:AK065485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3893011/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38880Os.11612.1.S1_at10/1112+23878675..23881227pentatricopeptide, putative, expressed
LOC_Os12g38890NANA12+23881418..23883176transposon protein, putative, unclassified
LOC_Os12g38900Os.23421.1.S1_at11/1112+23885360..23889818Chorismate mutase, chloroplast precursor, putative, expressed
LOC_Os12g38910Os.53867.1.S1_s_at11/1112+23892149..23895285expressed protein
LOC_Os12g38910Os.53867.1.S1_at11/1112+23892149..23895285expressed protein
LOC_Os12g38920Os.26843.1.S1_at11/1112+23897862..23902154Heparanase-like protein 2 precursor, putative, expressed
LOC_Os12g38930Os.8792.1.S1_at11/1112+23902336..23907840Glycosyl transferase family 8 protein, expressed
LOC_Os12g38940Os.53057.1.S1_at11/1112+23910570..23913206Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38950Os.56278.1.S1_at11/1112+23914654..23918334Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38960Os.32996.1.S1_at11/1112+23918703..23922532Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38970Os.11217.1.S1_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S2_s_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S1_s_at10/1112+23926998..23934518Leo1, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8792.1.S1_at--630--5311Chr12:23902860..23902884 (25 bp)
GAAGGATACCCACGAAATGCTCTCT
LOC_Os12g38930
Os.8792.1.S1_at--347--3011Chr12:23902845..23902869 (25 bp)
AATGCTCTCTGAACAGTAACCCGGA
LOC_Os12g38930
Os.8792.1.S1_at--426--7051Chr12:23902830..23902854 (25 bp)
GTAACCCGGAGCTGGTACACGAGCG
LOC_Os12g38930
Os.8792.1.S1_at--819--3672Chr09:18242164..18242624 (25 bp)
CTATACACTAGGATCTCTTTCCCTT
NONE
Os.8792.1.S1_at--180--2251Chr12:23902660..23902684 (25 bp)
AAATTGCCTGATTTGGCGGGATTGA
LOC_Os12g38930
Os.8792.1.S1_at--572--7851Chr12:23902634..23902658 (25 bp)
GGTAGGCCCATCGTTATTGTAATTG
LOC_Os12g38930
Os.8792.1.S1_at--238--6631Chr12:23902610..23902634 (25 bp)
GTTGGGTATCCAGTTCACCACATGA
LOC_Os12g38930
Os.8792.1.S1_at--309--3511Chr12:23902581..23902605 (25 bp)
CATGGGCCAGATTTTGATTTTGCAA
LOC_Os12g38930
Os.8792.1.S1_at--310--10271Chr12:23902563..23902587 (25 bp)
TTTGCAAAGCAAGCCCTGTACATTT
LOC_Os12g38930
Os.8792.1.S1_at--108--7031Chr12:23902546..23902570 (25 bp)
GTACATTTGCTTCCTGTTTTCTTTA
LOC_Os12g38930
Os.8792.1.S1_at--727--6471Chr12:23902499..23902523 (25 bp)
GATACTCTGGTGTCACTGGTGTCAT
LOC_Os12g38930
Target Sequence 
GAAGGATACCCACGAAATGCTCTCTGAACAGTAACCCGGAGCTGGTACACGAGCGGATGGAGAATATTTAATGAACACAA
AGGAAATATTTTCTTCCTATACACTAGGATCTCTTTCCCTTTATTTATTCCATTTGTATCATAGCTCATGAAATTACAGT
ATTGTTTAGGATGGTTCTTTTGTATTTATTGGAGCAATATAAATTGCCTGATTTGGCGGGATTGATGGTAGGCCCATCGT
TATTGTAATTGTTGGGTATCCAGTTCACCACATGAACAACATGGGCCAGATTTTGATTTTGCAAAGCAAGCCCTGTACAT
TTGCTTCCTGTTTTCTTTATCTTTTTGTGGTCATCTGGTATGATACTCTGGTGTCACTGGTGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis