Browse Element(s) Details


OsAffx.32089.1.S1_at

Description tigr:9640.m03798
TID=OsAffx.32089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3899011/11BED zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38960Os.32996.1.S1_at11/1112+23918703..23922532Zinc finger, C2H2 type family protein, expressed
LOC_Os12g38970Os.11217.1.S1_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S2_s_at11/1112+23926998..23934518Leo1, expressed
LOC_Os12g38970Os.36267.1.S1_s_at10/1112+23926998..23934518Leo1, expressed
LOC_Os12g38980OsAffx.20017.1.S1_at11/1112+23937166..23938105hypothetical protein
LOC_Os12g38990OsAffx.32089.1.S1_at11/1112+23947305..23948240BED zinc finger family protein
LOC_Os12g39000OsAffx.7834.2.A1_at11/1112+23951674..23952108hypothetical protein
LOC_Os12g39010Os.14491.2.S1_x_at2/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.47463.1.S1_x_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.27037.1.A1_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39020OsAffx.20018.1.S1_at11/1112+23966732..23967787BED zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32089.1.S1_at--161--4991Chr12:23947357..23947381 (25 bp)
GCATGCTGGCAGTTGATCTCCTTGG
LOC_Os12g38990
OsAffx.32089.1.S1_at--704--9891Chr12:23947782..23947806 (25 bp)
TACTTCGTCTTCGTGCAGCAGCTGG
LOC_Os12g38990
OsAffx.32089.1.S1_at--852--1511Chr12:23947798..23947822 (25 bp)
AGCAGCTGGTAGTGCGCATCACCGG
LOC_Os12g38990
OsAffx.32089.1.S1_at--966--7931Chr12:23947914..23947938 (25 bp)
GGATTAGCATCAGCTACTACCCACG
LOC_Os12g38990
OsAffx.32089.1.S1_at--74--2031Chr12:23947929..23947953 (25 bp)
ACTACCCACGGCAATGCCATTGTTG
LOC_Os12g38990
OsAffx.32089.1.S1_at--1144--651Chr12:23947972..23947996 (25 bp)
ATGACGGGAATGTGCGTCGTCCGCC
LOC_Os12g38990
OsAffx.32089.1.S1_at--244--5451Chr12:23948114..23948138 (25 bp)
GAACGAGGCGTCATGCAGGTACTGC
LOC_Os12g38990
OsAffx.32089.1.S1_at--680--9051Chr12:23948127..23948151 (25 bp)
TGCAGGTACTGCACCAAGACGCTGT
LOC_Os12g38990
OsAffx.32089.1.S1_at--733--8311Chr12:23948153..23948177 (25 bp)
GGCTAATTCCAGAGGCGGCACGTCT
LOC_Os12g38990
OsAffx.32089.1.S1_at--670--1311Chr12:23948163..23948187 (25 bp)
AGAGGCGGCACGTCTCATCTCAGGA
LOC_Os12g38990
OsAffx.32089.1.S1_at--307--451Chr12:23948179..23948203 (25 bp)
ATCTCAGGAGGCACGTCAACCGATG
LOC_Os12g38990
Target Sequence 
GCATGCTGGCAGTTGATCTCCTTGGCCCAGCTGCAGATGCAGGAACAGTAACAGAGGAGGGCTACTTCGTCTTCGTGCAG
CAGCTGGTAGTGCGCATCACCGGCGGCGGCGCCGCCGCCGCCGCCGGCATTTCGTTGCCAACGTCGTCGTCAATGCAGGA
AGAAGCATCTGCAGTAGTAGACGTTACAATTGATGGATTAGCATCAGCTACTACCCACGGCAATGCCATTGTTGCCGACG
ACGACGCGGGCGATGACGGGAATGTGCGTCGTCCGCCATCGTCGTCGTCGAGAGGAGGAGGAGGAGGAGGAGGAGGAACA
ATAAGGACATCAAGATCAAGAAGAAGAAGAAGGAGATCGGTGGTATGGGAGCACATGGAGGTGGATCCGTCGGGGAACGA
GGCGTCATGCAGGTACTGCACCAAGACGCTGTCGGCTAATTCCAGAGGCGGCACGTCTCATCTCAGGAGGCACGTCAACC
GATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis