Browse Element(s) Details


OsAffx.20018.1.S1_at

Description tigr:9640.m03801
TID=OsAffx.20018.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3902011/11BED zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38990OsAffx.32089.1.S1_at11/1112+23947305..23948240BED zinc finger family protein
LOC_Os12g39000OsAffx.7834.2.A1_at11/1112+23951674..23952108hypothetical protein
LOC_Os12g39010Os.14491.2.S1_x_at2/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.47463.1.S1_x_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39010Os.27037.1.A1_at1/1112+23960185..23965124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g39020OsAffx.20018.1.S1_at11/1112+23966732..23967787BED zinc finger family protein
LOC_Os12g39030OsAffx.20019.1.S1_at10/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39030Os.50043.1.A1_at1/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39040NANA12+23979837..23980325retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20018.1.S1_at--606--1331Chr12:23966782..23966806 (25 bp)
AGAGGTTACTAGTCATGCAGCAGCT
LOC_Os12g39020
OsAffx.20018.1.S1_at--611--4651Chr12:23966850..23966874 (25 bp)
GCGTCGATGATGCAGCCAGCCTTTG
LOC_Os12g39020
OsAffx.20018.1.S1_at--1062--3371Chr12:23966862..23966886 (25 bp)
CAGCCAGCCTTTGGGTGCAGCCGAA
LOC_Os12g39020
OsAffx.20018.1.S1_at--31--5291Chr12:23966884..23966908 (25 bp)
GAAGGCGAAGAACCCTCTTGTTGAT
LOC_Os12g39020
OsAffx.20018.1.S1_at--141--9591Chr12:23966899..23966923 (25 bp)
TCTTGTTGATGACCCCGACTTGATA
LOC_Os12g39020
OsAffx.20018.1.S1_at--359--5691Chr12:23966915..23966939 (25 bp)
GACTTGATACGCTTTGCTGACGACC
LOC_Os12g39020
OsAffx.20018.1.S1_at--1107--4151Chr12:23967529..23967553 (25 bp)
CGCCGCCAGTGTCGAATATGATGTG
LOC_Os12g39020
OsAffx.20018.1.S1_at--367--6271Chr12:23967548..23967572 (25 bp)
GATGTGCATCCAAACGGAGGCCAGG
LOC_Os12g39020
OsAffx.20018.1.S1_at--121--2111Chr12:23967636..23967660 (25 bp)
ACATGACATTAGATCCGTCGGGAAA
LOC_Os12g39020
OsAffx.20018.1.S1_at--537--5551Chr12:23967657..23967681 (25 bp)
GAAACGAGGCATCGTGCACCTACTG
LOC_Os12g39020
OsAffx.20018.1.S1_at--1150--2291Chr12:23967707..23967731 (25 bp)
AAAGGCGGCACAAGTCATCTCAGGA
LOC_Os12g39020
Target Sequence 
AGAGGTTACTAGTCATGCAGCAGCTGCCTCCACGCAGGGGGACGCGAACTTCACCGGCGGCCTCGACGGCGTCGATGATG
CAGCCAGCCTTTGGGTGCAGCCGAAGGCGAAGAACCCTCTTGTTGATGACCCCGACTTGATACGCTTTGCTGACGACCTC
CTCAACTTAACCGCAGCTGCCATCGGCGCCGCCAGTGTCGAATATGATGTGCATCCAAACGGAGGCCAGGGAAGAAGAAG
GTCAACAATAAGAAGAAGAAGAAGAAGAAGAAGAAGATCAGTGGTATGGAAATACATGACATTAGATCCGTCGGGAAACG
AGGCATCGTGCACCTACTGCACCAAGAAGCTGTCGGCTAATTCCAAAGGCGGCACAAGTCATCTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis