Browse Element(s) Details


OsAffx.15372.1.S1_x_at

Description tigr:9634.m01133
TID=OsAffx.15372.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AT5g64600MUB3_12
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1160011/11Plant protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11550NANA6+6121038..6122369retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11560NANA6+6126033..6128402retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g11570Os.14919.1.S1_at7/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570Os.56216.1.S1_at2/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11570OsAffx.29313.1.S1_at1/116+6130904..6136479SWIM zinc finger family protein
LOC_Os06g11580OsAffx.27568.1.S1_at11/116+6140611..6141770hypothetical protein
LOC_Os06g11590OsAffx.4800.1.S1_at11/116+6143587..6144405expressed protein
LOC_Os06g11590Os.4714.2.S1_x_at1/116+6143587..6144405expressed protein
LOC_Os06g11590Os.4714.2.S1_at1/116+6143587..6144405expressed protein
LOC_Os06g11600OsAffx.15372.1.S1_x_at11/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11600Os.47251.1.S1_at8/116+6145722..6150197Plant protein family protein, expressed
LOC_Os06g11610Os.12234.2.S1_s_at11/116+6151031..6152439Hsp20/alpha crystallin family protein, expressed
LOC_Os06g11620Os.12166.1.S1_at11/116+6154941..6158887Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630Os.22584.1.S1_at10/116+6159331..6162652F-box family protein, putative, expressed
LOC_Os06g11640Os.49227.1.S1_at11/116+6170590..6175330Phosphotyrosyl phosphate activator protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15372.1.S1_x_at--576--631Chr06:6148947..6148971 (25 bp)
ATGCTTCTCAAATGGCAGCTTTAGA
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--1--771Chr06:6148995..6149019 (25 bp)
ATGTCTTTATTCCATCATATTCGGG
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--631--7691Chr06:6149041..6149065 (25 bp)
GGGTCATCGTCGTTTTCTTGGCCAC
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--646--8191Chr06:6149067..6149089 (23 bp)
GGAAGACCATCATTCCTGACAGGAA
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--784--171Chr06:6149434..6149458 (25 bp)
ATTTTATGAGAACCCTCTTCCTGAC
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--632--4911Chr06:6149492..6149516 (25 bp)
GCTTCTGTGGTCAGCATCTAGTCAG
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--659--1071Chr06:6149515..6149539 (25 bp)
AGGGAGCCGATCATCCTTAACGTCA
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--991--8991Chr06:6149598..6149622 (25 bp)
TGAAGATCTCCACAGCATCACCGTT
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--626--3551Chr06:6149613..6149637 (25 bp)
CATCACCGTTCAGTTTTTGCTTAGA
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--545--10271Chr06:6149628..6149652 (25 bp)
TTTGCTTAGATGACATCACGCCCCA
LOC_Os06g11600
OsAffx.15372.1.S1_x_at--618--7331Chr06:6149664..6149688 (25 bp)
GTGCATTGCCAATTTGCCAGCCCAA
LOC_Os06g11600
Target Sequence 
ATGCTTCTCAAATGGCAGCTTTAGACTACATTGTTTCAGTGGAGAGTGATGTCTTTATTCCATCATATTCGGGGAACATG
GCACGGGCTGTCGGGGGTCATCGTCGTTTTCTTGGCCACAGGAAGACCATCATTCCTGACAGGAAAGCATTAGTTCGCTT
GTTTGATAAAGTTGATGGTGGATTACTGAACGAAGGGGAGAGACTATCACGAAGGATAATAGATATCCATCGGAAAAGAC
AAGGATCTCCGAGGAAAAGGAAAGGTCCTGTATCAGGAACAAAAGGCAACGATAGGTTTCGGTCAGAAGAGGCATTTTAT
GAGAACCCTCTTCCTGACTGCCTGTGTCAACCGGAGTCCCCAGCCAGCGATGCTTCTGTGGTCAGCATCTAGTCAGGGAG
CCGATCATCCTTAACGTCACTAATCACCACTACCAAGTACATAAACCAACCCACAAACACAGAGGAAGATGCTATACTGA
AGATCTCCACAGCATCACCGTTCAGTTTTTGCTTAGATGACATCACGCCCCAACTATTCGTTGGTGCATTGCCAATTTGC
CAGCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15372.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis